Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2714 |
Symbol | rplC |
ID | 4202163 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2974247 |
End bp | 2974876 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638083580 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_697094 |
Protein GI | 110800321 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000231855 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAAAG CTATAATAGG TAAAAAAGTT GGAATGACTC AAATATTCGA TGAGAATGGT AGAGTAATCC CTGTAACTGT AGTTGAAGCT GGTCCATGTG TTGTAGTTCA AAAGAAAACA GTTGAAACTG ATGGATATGA CGCAATACAA GTTGGATTCG GTGAATTAAG AGAAAAATTA GTTAACAAAC CAAGAAAAGG ACATTTCGCT AAAGCAGGTG TTTCTTTAAG AAGAACTTTA AAAGAGTTCA GAATGGAAGA TGTTGCTAAT TACAATGTTG GAGACGAAAT AAAGGTTGAC ACATTTGAAA TTGGAGACAA AGTAGACGTA TCAGGAGTTT CTAAAGGTAA GGGATTCCAA GGTACAATCA AAAGATGGAA TGCTAGTAGA GGACCAATGT CTCACGGTTC TAAATTCCAC AGAGCACCAG GTTCAATGGG AGCTGCTTCA GACCCATCAA GAACTTTCAA GAACAAAAGA ATGCCTGGAC ATATGGGAGC TAAGAACACA ACTGTTCTTA ACTTAGAAGT TGTTAAGATA ATGCCTGAAA AGAACATCAT CTTAATCAAG GGTGGAATCC CAGGTCCAAA TAAAGGCACA GTAGTTATAA GAAACAGCGT TAAGGCTTAA
|
Protein sequence | MKKAIIGKKV GMTQIFDENG RVIPVTVVEA GPCVVVQKKT VETDGYDAIQ VGFGELREKL VNKPRKGHFA KAGVSLRRTL KEFRMEDVAN YNVGDEIKVD TFEIGDKVDV SGVSKGKGFQ GTIKRWNASR GPMSHGSKFH RAPGSMGAAS DPSRTFKNKR MPGHMGAKNT TVLNLEVVKI MPEKNIILIK GGIPGPNKGT VVIRNSVKA
|
| |