Gene CPF_2378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_2378 
Symbol 
ID4203032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2649352 
End bp2650665 
Gene Length1314 bp 
Protein Length437 aa 
Translation table11 
GC content29% 
IMG OID638083243 
Productcell envelope-related function transcriptional attenuator 
Protein accessionYP_696801 
Protein GI110801436 
COG category[K] Transcription 
COG ID[COG1316] Transcriptional regulator 
TIGRFAM ID[TIGR00350] cell envelope-related function transcriptional attenuator common domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0983623 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGAATG AAGAAAATAG ATTTGAAAAA AGACAAGATA AGAAAAATAT CAATAAAAAA 
AGCTTGGTAA AAAGAATAAT TTTAGGTGCT TTAGCTTTTA TTCTTATTTT TTTTATAAGT
ATTTTTGGAT ATTTTTATTT TAAATATGGC AGTTTTTTAG GGGAAGTTTT TAATATAGTT
AAAGACGTAA AACAGGATGT AATAAAGGTT GAAGAGCCAA TTAATGTACT CTTATTAGGA
ATGGATATTG GTGATACAAG TGATGTATCA AATAAAGATG CTAAAAGAAC AGATACCATA
ATTCTAGCAA ACTTTGATCC TATAACAAAA GAGGCTAAGT TAATATCTAT ACCTAGAGAT
ACTAGAGTAA AAATTGGAGG AAAGTCTCAA AAAATAAATG CTGCTTACCC AATTGGGGGA
GAAAAGCTTG TTAAACAGCT TGTTGGAAAT ATATTAGGGG TTAAGGTTGA TTATGTTGTT
AAAGTTGATT ATGAAGGCTT TAGAGGCATA ATAGATGCCA TTGGTGGAAT TGATATGTAT
ATAGAGCAGG ATATGAACTA TGACGATCCA GGGCAGGATT TACACATACA TTTCAACAAG
GGAGAAACTG TACACCTAGA TGGTAAAAAA GCTGAAGAGT TTTTTAGATG GAGAAAAAAT
AATGATGGTA CAGGATTAGT AAATGGAGAT GTTGATAGAA TAAAAAATCA ACAAAAGTTT
ATAAATGCTG TAATAGATAA GGTTTTATCA GTATCTACCA TAACAAAGAT AGATAGTATA
GCAGAGATTT TAAATAAAAA TATAGAAACT AATATTCCTT TAGATGTTAC TGTTGCATAT
GGACTTAAAG GATTAGAGAC TGATAAGAAT AATATAAAAA TGATGACTTT ACCTGGAGAA
GGTAAATATG TTGGAAATGT TTCTTATTAT ATTCCTGATG AAAAGGCTAC TAAAGAATTA
AGAAGTCAAT TAAACAGTAG TAATTTAAGT GGAAGAAAAA ATGTTATTCC TAGTGCTGCT
AGAGGAGATT TATCCATAAA AGTTTTAAAT TGCACAAAAA TAAATGGCTT AGCTGCAAAT
GTACAAAAAC AATTAAATGA AAACGGATAT GATAAAGTTG ATGTTGGAAA TGGAGATCCA
AGAGAAAAAT CAGAGATTTT GATAAAGGAT GAAAGTTCTA GAGCTTTTAT GGAAAATGAT
TTAAAGATAG AGAATATTAA AAAGGGCATT TCATCTAAGT ATGATGGAAA TGGAACTTAT
GATGTAGTAA TATTACTAGG AAAAGACTTT AAAAATTTCG GAGAGATGAA ATGA
 
Protein sequence
MGNEENRFEK RQDKKNINKK SLVKRIILGA LAFILIFFIS IFGYFYFKYG SFLGEVFNIV 
KDVKQDVIKV EEPINVLLLG MDIGDTSDVS NKDAKRTDTI ILANFDPITK EAKLISIPRD
TRVKIGGKSQ KINAAYPIGG EKLVKQLVGN ILGVKVDYVV KVDYEGFRGI IDAIGGIDMY
IEQDMNYDDP GQDLHIHFNK GETVHLDGKK AEEFFRWRKN NDGTGLVNGD VDRIKNQQKF
INAVIDKVLS VSTITKIDSI AEILNKNIET NIPLDVTVAY GLKGLETDKN NIKMMTLPGE
GKYVGNVSYY IPDEKATKEL RSQLNSSNLS GRKNVIPSAA RGDLSIKVLN CTKINGLAAN
VQKQLNENGY DKVDVGNGDP REKSEILIKD ESSRAFMEND LKIENIKKGI SSKYDGNGTY
DVVILLGKDF KNFGEMK