| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2276 |
|---|
| Symbol | |
|---|
| ID | 4202339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2524913 |
|---|
| End bp | 2526967 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638083141 |
|---|
| Product | putative hydrolase |
|---|
| Protein accession | YP_696699 |
|---|
| Protein GI | 110799495 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1480] Predicted membrane-associated HD superfamily hydrolase |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAAAT TGAAGGAAAA AACATTTGAT ATATTTAAAG ATTACAAAAA AATAATCTTA
TATATAATAA CCTTTATAGT TTTATACTGT ACTTTGATGA CTGGTATAAT AACAAGAAAG
TATGATTTAA AGGTAGGAGA TATACCTAAG TCAGACATTA AGGCACATAG AGAAATTATT
GATGAATCAG CTACTGAAGC AAGAAAAAAA GAAGCTGAAG AAAAGGTTGA TAAACAATAT
TCTCTAAGGA CGGATGTTCA GAAGCAAAGT GAAGAAAAGA TAAAGGGTTT CTTTTCTTCA
GTTGAAAAAG TTTTAGCTCA AGATAAGCCA GAAGAAGAAA AGGCTAAGCT TATTCCTAGA
GCACCATTTA AAATAACAGA TGCACAGGCA AATAAAATTG CCTCAATGAA TGAGCAAAGC
ACTAAGAAAT TAGAAAGCGT ATGCATAGAT GGTCTAAATA AGGCATATGA GGCTCCAATT
GAAGATGGAA ATGAGCAAGA CTTAAAGGAA GCTAAAAAAG AATATACAGA TTTTATATCT
TCCAGTGATT TAAGTGATTC AGAGAAGGCT ATTGCATTAA ATTTTGTTAA TGTAGTAGAA
CCAAATTTTT TCTATGATAA AGAAAAAACT GATGAATTAA TAAAAGAAAC CTTAAAGCAA
GTTCCGCCAG TTATGATAAA GAAAAATCAA ATAGTAGTAA GTGAAGGTGA GCCAGTTACA
GCACATCAAT TAGAGCTTTT AGGAACTTTA GGCTTATTAA GCGACTCAGC TTCAGCGCTA
TATATTTATA TTGCTCTAGG AGTTTTAGTA ATAATAGTTA TGTATCTTCA ATATGGATAC
ATACATAAAT ATTATCCAGC TATAAATAAA GAGTTTTCCA AAATAGTTAT GATAAGCATA
TTAAATGTAT TTCCAGTAAT ACTAGCTAGG CTTTTTGGCA TGATGTCAAA CTATATAATA
CCACTAGCAT GTATGCCTAT GCTTATAACA CTTCTACTAA ATTACAAAAT ATCACTAGTA
TTTAGTATGT TAAATGTAAT TTTAATAGGA GGAGCAGTGG GATTTAATCC TAATATAATA
ATCCTTGCTA TTTTAAATGT TGTTTTAGGA GGAACATTGC TTAGAAAAAT GCAACAGAGA
AATGATATAT TATATTCTTC AATAACCGTT GCAGTTTTAA GTTCAATATT AACTTTTAGT
GTTGGTACTT TAACAACTAA TAACTTTATG GAAATACTTG CAGATAGTAC ATTTGCAGCG
GCAGGAGCTA TACTTTCTGG AATACTTACA ATAGGTGTTT TACCATTCTT TGAGTCAACA
TTTGATATAG TAACTAATGC TAAGTTATTA GAATTATCTA ATCCTAATAA TCCATTACTT
AAAAAATTAC TAATGGAGGC TCCAGGAACA TATCATCATA GTATTTTAGT AGCAAACTTA
GCAGAGTTAG CTGCTGAGCA AGTAGGAGGA AATCCGCTAT TAGCTAGGAT AGGAGCTTAT
TATCATGATG TTGGTAAAAC TAAGAGACCA TATTTCTTTA GAGAAAATCA GTTTGGAAAG
AAAAATCCAC ATGATAGGTT AAAACCAGAA GTAAGTAGTA AAATAATAAT ATCTCACGTT
AAAGATGGAT CAGAATTAGC CAAGGAATAT AATTTACCTA AGACTATACA TGATTTTATA
GTTACCCATC ATGGGGAGAC TTTAGTTAAA TATTTTTACT TAACAGTAAA AAATAACTCT
GAAAATCCAG AAGAGGTTAA GGAAGAGGAT TTTAAATATC CAGGACCAAA ACCTATGAGT
AAAGAACAAG GAATTGTTAT GCTAGCAGAT TCAACAGAGG CAGCTGTAAG ATCAATTAAT
GAACCTACTG AAGAGAAAAT TGAAAAAATG GTCAATAATA TTATTGATGA TAAGTTAGCA
TCTGGACAAC TAGACAATTG TGATCTTACT CTTAGAGATA TAAGTAAGAT AAAAAAATGT
TTCCTAAAGG CATTAAATGG AATACATCAT GAAAGAATAG AATATCCAGA TGATAACAAG
AAGGAGAAAA AATAA
|
|---|
| Protein sequence | MGKLKEKTFD IFKDYKKIIL YIITFIVLYC TLMTGIITRK YDLKVGDIPK SDIKAHREII
DESATEARKK EAEEKVDKQY SLRTDVQKQS EEKIKGFFSS VEKVLAQDKP EEEKAKLIPR
APFKITDAQA NKIASMNEQS TKKLESVCID GLNKAYEAPI EDGNEQDLKE AKKEYTDFIS
SSDLSDSEKA IALNFVNVVE PNFFYDKEKT DELIKETLKQ VPPVMIKKNQ IVVSEGEPVT
AHQLELLGTL GLLSDSASAL YIYIALGVLV IIVMYLQYGY IHKYYPAINK EFSKIVMISI
LNVFPVILAR LFGMMSNYII PLACMPMLIT LLLNYKISLV FSMLNVILIG GAVGFNPNII
ILAILNVVLG GTLLRKMQQR NDILYSSITV AVLSSILTFS VGTLTTNNFM EILADSTFAA
AGAILSGILT IGVLPFFEST FDIVTNAKLL ELSNPNNPLL KKLLMEAPGT YHHSILVANL
AELAAEQVGG NPLLARIGAY YHDVGKTKRP YFFRENQFGK KNPHDRLKPE VSSKIIISHV
KDGSELAKEY NLPKTIHDFI VTHHGETLVK YFYLTVKNNS ENPEEVKEED FKYPGPKPMS
KEQGIVMLAD STEAAVRSIN EPTEEKIEKM VNNIIDDKLA SGQLDNCDLT LRDISKIKKC
FLKALNGIHH ERIEYPDDNK KEKK
|
|---|
| |