Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2043 |
Symbol | |
ID | 4202148 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2282660 |
End bp | 2283529 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 26% |
IMG OID | 638082908 |
Product | GGDEF domain-containing protein |
Protein accession | YP_696472 |
Protein GI | 110800306 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTATAT TAAAGAACTT TTATGATGAA GTTAGAGTGG TAGATCCTAT AAATAATATA GTATTTTCAG ATGACTTTAA CCTAAAAATC AATAATAAAT TTAATGAAAA AGATTGTTCA CTAAGCAATT GTTATGATGT GTGGGGAAAA AAATCAATAT GTAGTACTTG CATATCAAAA AAAGCTTATT TAAAAAATGA TACTTTTATA AAGTTAGAAT ATAATAAAAA TCATGTGTTT TTAGTTATAG CTTCCCCAAT TGAATTTAAT GAAAATAAAT ATGTTGTTGA AATATTAAAA GATATAACTA ATAATGGCAG TATAGTAGAT GGTAGTGGAG AAGGTAATTA TTTAGACTTA ACAATGAAAA AGATGGGAGA AAATCTTATT AAGGATTATT TAACTGGAGT CTATAATAAA AGGTATATAG ATCAGAGATT TTCAAAGGAA GCTCATAGAA ACTTAAAAGA ATCTATACCT ACAACTGTAA TTATGACTGA TATAGATTCC TTTAAAAAAG TAAATGATAC CTATGGTCAT TTAGTAGGTG ACAAAATTTT AAGGGGTTTT GCAAAGGTAT TAAATAATAA TATCAGAGAA AATAGTGACT GGATTGGTAG ATATGGAGGA GAAGAATTCA TAATTGTTTT AAATAATACC AATTTGAAAA ATGGAGTGAA GGTTGCTGAG AAGCTTAGAA AAATCATAGA AAAAATGAGC TTTGACTATG GTGATTTAAG TTTAAAAATA ACTTCTAGCT TCGGAGTTTG TGAAGTTTCA GAAAAAGAAG ATCCTTTTGA TACCATAAAA AATGCTGATG AAAAATTATA TATGGCAAAA ATGACAGGAA GAAATAAAAC TGTATTTTAG
|
Protein sequence | MSILKNFYDE VRVVDPINNI VFSDDFNLKI NNKFNEKDCS LSNCYDVWGK KSICSTCISK KAYLKNDTFI KLEYNKNHVF LVIASPIEFN ENKYVVEILK DITNNGSIVD GSGEGNYLDL TMKKMGENLI KDYLTGVYNK RYIDQRFSKE AHRNLKESIP TTVIMTDIDS FKKVNDTYGH LVGDKILRGF AKVLNNNIRE NSDWIGRYGG EEFIIVLNNT NLKNGVKVAE KLRKIIEKMS FDYGDLSLKI TSSFGVCEVS EKEDPFDTIK NADEKLYMAK MTGRNKTVF
|
| |