| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_2028 |
|---|
| Symbol | |
|---|
| ID | 4201536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2269646 |
|---|
| End bp | 2271313 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638082897 |
|---|
| Product | RNA-metabolising metallo-beta-lactamase family protein |
|---|
| Protein accession | YP_696461 |
|---|
| Protein GI | 110799451 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily |
|---|
| TIGRFAM ID | [TIGR00649] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTG AAAAGCTAAA GGTTAAAATT ATACCTTTAG GTGGTTTGAA CGAGATAGGT
AAGAATCTAA CTGTTATCGA ATTTAAAGAC GATATAATTG TAGTCGACTG TGGACTTAAG
TTCCCAGACG AAGATATGTT TGGTATTGAT ATAGTTATTC CAGACGTATC ATATCTTGTT
AAAAATGCAG AAAAAGTTAG AGGAATATTT TTAACTCATG GTCATGAAGA TCATATTGGT
GCTTTACCAT ATGTGTTAAA AAATTTAAAT GTACCTGTTT ATGGAACAAA ACTTACTTTA
GGAATAGTTG AAACTAAACT AAAAGAACAT GGTTTATTAA GCACCACAGA GCTTATAAGA
GTTAAACCAA GAGATATTAT AAAATTAAAA TCATCATCTG TTGAATTTGT AAAAACTAAT
CATAGTATAG CAGATTCAGT TGCTATAGCA GTGCATACAC CACTAGGAGT TGTACTTCAT
ACTGGTGATT TTAAAGTAGA CTATACTCCA ACTGACGGAG AGGTAATGGA TTTTGCTAGA
TTTGCAGAAT TAGGAAGAAA AGGAGTTCTT GCAATGATGG CTGACTCTAC TAATGTAGAG
AGACCAGGAT ATACAATGTC AGAAAGAGCT GTAGGAGAAA ATCTTAAAAA AATATTTGTT
GGAGCAAAGG GAAGAATAAT AATAGCTACA TTTGCTTCAA ATATTCATAG AATACAGCAA
ATTGTTGAAG CTGCAGAAAT GACAGGAAGA AAGATTGCTG TTTCAGGAAG AAGTATGGAA
AATATAGTTC AGGTTGCCAT AGAACTAGGA TATTTAACAA TAGATAAGGA TTCTTTTGTT
AGCATAGATT CTATAAACAA ATATCCAAAT GAGCAAGTGA CTATAATAAC TACAGGAAGC
CAAGGAGAGC CAATGTCAGC ATTAGCTAGA ATGGCATCTT CAGAGCATAA AAAAGTTAAT
ATCATTGAGG GAGATACAGT AATACTATCT GCAACACCAA TACCTGGTAA TGAGAAGTTA
GTTTCTAAGG TTATTAATCA ACTTTTCAAA AAGGGAGCAG AAGTAGTGTA TGGAAAACTA
GCAGATGTCC ATGTTTCAGG TCATGCTTGC CAAGAGGAAT TAAAACTTAT GCAAGCTCTT
GTTAAGCCTA AATTCTTTAT ACCAGTTCAT GGTGAGTATA GACACCTTAA ACAGCATGCA
GAGTTAGCTG TTGATGTTGG ACTATCAGAA AAGAATTTTA TGATAGCTGA AAATGGAGAT
GTTATAGAAA TCACTAGAGA TTCAATCAAA AAGAATGGAT CTGTTACTTC AGGACAAATT
TTTGTTGATG GACTTGGAGT TGGTGATGTA GGAAACATAG TTTTAAGAGA TAGAAAACAT
CTTTCACAAG ACGGAATTCT TACAGTAGTT GTTACTATTT CAAAAGAAAC TGCTTCAGTG
GTAGCAGGAC CAGATATTAT ATCAAGAGGT TTTGTTTACG TAAGAGAATC AGAAGACTTA
ATGGATGAAG CTAAAGAGAT AGTAAAAGAC GTTTTAAGAG ATTGTGAAAA GAAAGGAATC
TGTGACTGGG CTACTATGAA ATCTAACATA AGAGATGGCC TTAGAAGTTT CCTTTATGAA
AAAACTAAGA GAAAACCAAT GATATTACCA ATAATAATGG AAATATAA
|
|---|
| Protein sequence | MKREKLKVKI IPLGGLNEIG KNLTVIEFKD DIIVVDCGLK FPDEDMFGID IVIPDVSYLV
KNAEKVRGIF LTHGHEDHIG ALPYVLKNLN VPVYGTKLTL GIVETKLKEH GLLSTTELIR
VKPRDIIKLK SSSVEFVKTN HSIADSVAIA VHTPLGVVLH TGDFKVDYTP TDGEVMDFAR
FAELGRKGVL AMMADSTNVE RPGYTMSERA VGENLKKIFV GAKGRIIIAT FASNIHRIQQ
IVEAAEMTGR KIAVSGRSME NIVQVAIELG YLTIDKDSFV SIDSINKYPN EQVTIITTGS
QGEPMSALAR MASSEHKKVN IIEGDTVILS ATPIPGNEKL VSKVINQLFK KGAEVVYGKL
ADVHVSGHAC QEELKLMQAL VKPKFFIPVH GEYRHLKQHA ELAVDVGLSE KNFMIAENGD
VIEITRDSIK KNGSVTSGQI FVDGLGVGDV GNIVLRDRKH LSQDGILTVV VTISKETASV
VAGPDIISRG FVYVRESEDL MDEAKEIVKD VLRDCEKKGI CDWATMKSNI RDGLRSFLYE
KTKRKPMILP IIMEI
|
|---|
| |