Gene CPF_1996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1996 
Symbolfmt 
ID4203921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2235577 
End bp2236506 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content31% 
IMG OID638082865 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_696429 
Protein GI110800829 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATAG TATTTATGGG AACACCAGAT TTTGCTGTTC CATCATTAAA GAGCTTAATA 
AATGAATTTG GAGTAGAAGC TGTTTTTACT CAACCAGATA GACCAAAGGG AAGAGGAAAG
AAATTAGGTA TGTCACCTGT AAAGGAAGTT GCTTTAGAAC ACAACATACC AGTTTATCAA
CCTCTAAGAT TAAAAAATGA ACCAGAAACT ATAGAAGAAT TAAAAAGTAT GGAGCCAGAC
TTTATAATAG TAGTAGCTTT TGGTCAGATA TTACCTAAAG AGGTTTTAGA TATTCCTAAG
TATGGATGTA TCAATCTACA TGCGTCATTA CTTCCTAAAT TTAGAGGAGC AGCACCTTTA
AACTGGAGTA TAATCAAAGG AGAAAAGGTA ACAGGAAATA CAACTATGCT TATGGATGTA
GGACTTGATA CTGGAGATAT GCTTTTAAAA GATGAAGTAG AAATAACTGA TAATATGACT
GCAGGAGAAT TACATGATAT TTTAATGGAA AGAGGAGGAG AGTTATTAGT TAGAACTATA
AAGGGCATAC TTAATAATGA AATAACTCCA GAAAAACAAA ATGAAGAAGA AACATGTTAT
GCTTCAATGC TTAATAAAGA AATAGCTAAA ATTGATTGGT CTCTTTCAGC ACAGGATATT
CATAATTTAG TTAGAGGATT AAATCCGTGG CCTGTAGCTT TAACTTCATA TGATGATATT
ACAATGAAAG TTCATCAAAC TAGAGTTGAA AAAGGGGATA GCAATAAAGA ACCAGGAACT
ATAATAGCTG TAGATAAAAC AGGAATTAAG GTTTCAACAG GCAAAGATAT ACTTGTTATA
GAAAAATTAC AGTTTCCAAA TAGCAAGCAA CTATTTGTAG AACAATTTAT AAATGGAAAC
TCAGTAGAAA TAGGTAAAGT TTTAAAATAA
 
Protein sequence
MKIVFMGTPD FAVPSLKSLI NEFGVEAVFT QPDRPKGRGK KLGMSPVKEV ALEHNIPVYQ 
PLRLKNEPET IEELKSMEPD FIIVVAFGQI LPKEVLDIPK YGCINLHASL LPKFRGAAPL
NWSIIKGEKV TGNTTMLMDV GLDTGDMLLK DEVEITDNMT AGELHDILME RGGELLVRTI
KGILNNEITP EKQNEEETCY ASMLNKEIAK IDWSLSAQDI HNLVRGLNPW PVALTSYDDI
TMKVHQTRVE KGDSNKEPGT IIAVDKTGIK VSTGKDILVI EKLQFPNSKQ LFVEQFINGN
SVEIGKVLK