| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1972 |
|---|
| Symbol | rnc |
|---|
| ID | 4202318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2212723 |
|---|
| End bp | 2213448 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 27% |
|---|
| IMG OID | 638082841 |
|---|
| Product | ribonuclease III |
|---|
| Protein accession | YP_696405 |
|---|
| Protein GI | 110798679 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0571] dsRNA-specific ribonuclease |
|---|
| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00427234 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTA AGGTGAAAGA TATAAATTTA ATAGAAGTTG AAAAACTTAT AGGAATTGAG
TTTGAAAACA AAGGAGTGCT TATAACAGCA TTAACGCATA GTTCATATGC AAATCAATTT
AAAGATGTAA AATATAATGA AAGATTAGAA TTTTTAGGAG ATTCAGTTTT ACAGCTTTGT
GTTACAAAAT ATTTATTTAA TAATTACAAA GATAAATCTG AAGGTGAATT AACAAAAATA
AGAGCTTTAG TAGTTTGTGA AAATTCTTTA CATAAAGTTT CAAAAAATCT ATCACTTGGT
AAGTATATAA GAATGAGTAA AGGTGAGGAA CTAACTGGAG GAAGAGAAAG AACTTCAATA
CAAGCTGATG CATTAGAAGC AGTAATTGCT GCAGTTTATT TAGATAAAGG AATTGAAGTT
GCAAATGACT TTATTTTAAG AAACTTTAAA GATGTTATAG ATAAGGCTAT AAATGAAGAA
ATAATCTTAG ACTTTAAAAC TAGATTACAA GAAGTTCTTC AAAAAAATGG GGAAGTTAAT
ATTGTTTATA ATTTAGTTAA GCATGAAGGA CCACCTCACA GAAGAAAATT CTTTACAGAC
CTTTTAATTA ATAATGAGAT TATGGGTCAA GGTGTTGGAT TTAGTAAAAA AGAATCAGAA
CAAAATGCAG CTAAAGCAGC ACTGCAAAGG TTAGGTGAAA TTAAATGGGA AAAAGACACT
ATATAA
|
|---|
| Protein sequence | MNFKVKDINL IEVEKLIGIE FENKGVLITA LTHSSYANQF KDVKYNERLE FLGDSVLQLC
VTKYLFNNYK DKSEGELTKI RALVVCENSL HKVSKNLSLG KYIRMSKGEE LTGGRERTSI
QADALEAVIA AVYLDKGIEV ANDFILRNFK DVIDKAINEE IILDFKTRLQ EVLQKNGEVN
IVYNLVKHEG PPHRRKFFTD LLINNEIMGQ GVGFSKKESE QNAAKAALQR LGEIKWEKDT
I
|
|---|
| |