| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1967 |
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| Symbol | ffh |
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| ID | 4201548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 2205098 |
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| End bp | 2206456 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 638082836 |
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| Product | signal recognition particle protein |
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| Protein accession | YP_696400 |
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| Protein GI | 110800465 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0541] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00064] signal recognition particle-docking protein FtsY
[TIGR00959] signal recognition particle protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000299479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTTTTG ATGGATTAGC GTCTAAATTA CAAGACACGC TTAAAAAATT AAAGGGTAAA
GGTAAGCTAA CAGAAAAAGA TATAAAAGAA GCCATGAGAG AAGTAAAGCT TGCGCTTTTA
GAGGCAGATG TTAACTTCAA GGTGGTAAAA AAGTTTATAT CAAATGTTAA AGATAAATGT
GTTGGTGAGG AAGTATTAAA TAGTTTAACT CCAGGTCAAC AGGTTATTAA AATAGTTAAT
GACGAATTAA CAACTCTTAT GGGAGAGACT GAGAGTAAAT TAAAATACTC AGACAATGGA
CCAACAGTGT TCATGTTAGT AGGTCTTCAA GGTGCAGGTA AAACAACTAT GGCTGGAAAA
CTTGCATTGC ACTTAAGAAA GAAAAACAAA AAGCCATTAC TTGTGGCTTG TGATATATAT
AGACCCGCAG CCATAAAGCA ATTACAGGTT GTAGGAAAAC AAATAGATAT ACCAGTATTC
TCAATGGGAG ATAAGGTTAA GGCTGTAGAT ATTGCCAAAG CTGCAATAGA GCATGCAAAA
GACAATGGAA ATAACGTTGT TATAATAGAT ACCGCTGGTA GACTTCATAT AGATGAAGAT
TTAATGCAAG AGTTAAAAGA TGTTAAAGAA GTTTCAAATC CTAGTGAAAT ATTATTAGTA
GTTGATGCTA TGACAGGTCA AGATGCTGTT AATGTAGCAG AGACATTTAA TAACTCATTA
GATCTTTCAG GAATAATATT AACAAAGTTA GATGGTGATA CAAGAGGTGG TGCTGCTCTT
TCCATAAGAG ACATTACTGG CAAGCCAATT AAATTTGTTG GTGTTGGTGA AAAGATGAGT
GATATTGAAG TATTCCATCC AGATAGAATG GCTTCAAGAA TATTAGGAAT GGGAGATGTC
CTTTCTTTAA TAGAAAAAGC TCAGCAAGCT ATTGACCAAG ATGAAGCAAG TAAGTTAAGT
GAAAAAATGT TAAATCAAGA ATTTAACTTT GATGACTACT TATCAGCTAT GGATCAAATG
AAAAAGCTTG GACCTATAAA TAAATTGATA GAGATGATTC CAGGTGTTAA CACAAAGGAA
CTTGAAGGTA TTGATTTTTC TCAAGGAGAA AAACAAATGG CTACAGTTAA AGCAATCATA
CAATCAATGA CAGCTAAAGA AAGAAAACAA CCTTCTTTAG TAATAGGAAA TGGTTCAAGA
AAGAGAAGAA TAGCTAAAGG TTCTGGTACA ACAGTACAAG AAGTAAATAA AGTCTTAAAA
GGCTATGAAA TGATGAAAAA GCAAATGAAG CAAATGAAAT CATTCCAAAA AAATGCTAGT
AAAAAGGGAT TTTTAAGTAA ACTTCCTTTT ATGAAATAA
|
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| Protein sequence | MAFDGLASKL QDTLKKLKGK GKLTEKDIKE AMREVKLALL EADVNFKVVK KFISNVKDKC
VGEEVLNSLT PGQQVIKIVN DELTTLMGET ESKLKYSDNG PTVFMLVGLQ GAGKTTMAGK
LALHLRKKNK KPLLVACDIY RPAAIKQLQV VGKQIDIPVF SMGDKVKAVD IAKAAIEHAK
DNGNNVVIID TAGRLHIDED LMQELKDVKE VSNPSEILLV VDAMTGQDAV NVAETFNNSL
DLSGIILTKL DGDTRGGAAL SIRDITGKPI KFVGVGEKMS DIEVFHPDRM ASRILGMGDV
LSLIEKAQQA IDQDEASKLS EKMLNQEFNF DDYLSAMDQM KKLGPINKLI EMIPGVNTKE
LEGIDFSQGE KQMATVKAII QSMTAKERKQ PSLVIGNGSR KRRIAKGSGT TVQEVNKVLK
GYEMMKKQMK QMKSFQKNAS KKGFLSKLPF MK
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