Gene CPF_1946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1946 
SymbolispG 
ID4202359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp2186139 
End bp2187188 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content32% 
IMG OID638082815 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_696379 
Protein GI110800593 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATAGAA AAGAAACTAG AAAGGTTAAG GTTGGAAACA TATATGTTGG AGGAGATTTT 
AGAGTTTCCA TTCAATCTAT GACCAATACA GATACAAAAG ATGTAGAAGC TACAGTTAAA 
CAAATAAGAG AGCTTCAAGA AGCTGGATGT GATATTGTTA GATGTGCAGT TTTAGATATG 
GATGCAGCTT GCGCTATAAA AGATATAGTG GCAAAAATTA ATATACCACT AGTTGCAGAC 
ATTCATTTTG ATTATAGATT AGCTTTAAAA GCAATAGAAA ATGGAGTTTC TGCAATAAGA 
ATAAATCCAG GAAATATTGG ATCTAGAGAA AAGGTAGAAG CTGTAGTAAA AGCTTGTAAA 
GAAAAAAACA TTCCTATAAG AATAGGGGTT AACTCAGGGT CATTATCAAA AGAACTTTTA 
GCAAAATATG GAAAACCTAC CCCAGATGCC CTAGTTGAAA GTGCATTAGA ACATGTTAAA 
ATATTAGAAG AGTTAGATTT TCATGATATA GTAATTTCAA TGAAATCATC AAATGTTGAA 
ACTATGATAG AAAGTTATAG AATAGCTTCA CAAAAAACAA ATTATCCTCT TCACTTAGGG 
GTTACTGAGG CTGGTACACC TTGGAGAGGA ACAATAAAAT CTGCTATAGG AATAGGAACT 
TTACTTGCAG AAGGAATAGG TGATACTATA AGAGTTTCTT TAACTGGAGA TCCTGTTGAA 
GAGATAAAAG TAGGTAAAGA AATTCTTAAA AACTTTGGAT ATGTAAAAGA AGGAATAGAG 
TTTATATCAT GTCCTACATG TGGAAGAACT CAAATAGACT TAATAAACAT AGCTAAAGAA 
GTAGAACAAA GACTAAGTTC TTGCAAGAAA AATATAAAGG TTGCAGTAAT GGGCTGTGTT 
GTAAATGGAC CAGGAGAAGC AAGAGAGGCA GATATTGGGA TAGCTGGAGG TAAAGGTGAA 
GGTCTTATCT TTAGAAAAGG TGAAATAATT AAAAAAGTAA AAGAAGAAGA CTTAGTTGAA 
GAGCTTATAA AGATAATAGA AACAATATAA
 
Protein sequence
MNRKETRKVK VGNIYVGGDF RVSIQSMTNT DTKDVEATVK QIRELQEAGC DIVRCAVLDM 
DAACAIKDIV AKINIPLVAD IHFDYRLALK AIENGVSAIR INPGNIGSRE KVEAVVKACK 
EKNIPIRIGV NSGSLSKELL AKYGKPTPDA LVESALEHVK ILEELDFHDI VISMKSSNVE 
TMIESYRIAS QKTNYPLHLG VTEAGTPWRG TIKSAIGIGT LLAEGIGDTI RVSLTGDPVE 
EIKVGKEILK NFGYVKEGIE FISCPTCGRT QIDLINIAKE VEQRLSSCKK NIKVAVMGCV 
VNGPGEAREA DIGIAGGKGE GLIFRKGEII KKVKEEDLVE ELIKIIETI