| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1886 |
|---|
| Symbol | |
|---|
| ID | 4203142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2121843 |
|---|
| End bp | 2122802 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 638082755 |
|---|
| Product | glycosyl transferase, group 4 family protein |
|---|
| Protein accession | YP_696319 |
|---|
| Protein GI | 110799306 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGT ATTTAATTGT AATGCTTATT CCTTTTGTCA TAGTATATCT ATTAATGCCA
AAGTTTATTG AATTTGCAAA TGAAAAGGGT TTTGTTGATA AGCCTACAGG AAGAAAAAAA
CATGATAAAT TAACACCTTT AATAGGTGGG GTTGTTATGT ATATAGGATT TTTTGCAACA
TACCTTTTTG GAATAGATTC TACAAGGCAA TTATCACAAA CTTTTATTAT ATTTATAGCA
TCTACTTTGG TAATAATAAT AGGAGTAATT GATGACTATT ATAAGGGAAA GGGCAAAGAG
TTTCCAATTT ATCCAAGGGT TATAATTCAA ATTTTAGCTG CAACTATGGT TTTTAAAGCT
GGGATTGTTT TTAGAGGTAT AACTAATCCA TTTACTGGAG AGTTTACTCA ATTTTCAGGA
TGGATTCAAT ATATACTTAC AATAACATGG ATTTTTGGGG TTACTACAGT AATAAACTGG
TCTGATGGAA TGGATGGATT AGCAGGAAGC ATTTCCATAA TATCTGCTAT GACTATGTTT
GTTGTTGCTC TTGCAAAAGG ACAATTTAAC TCTGCATATA TGTCAATAAC TCTAGTAGGG
TCAATATTAG CCTTTTTAAG ATATAATAGA CATCCAGCGC GGGTATTTAT GGGTGATTCA
GGTGCTAACT TTTTAGGGTT TATTTTAGCT ATTATAGCCT TAGAAGGTGC TTTTAAGCAA
GCAACAGCAT TATCTATATT AGTGCCAGTA TTAGCCTTAG GAGTTCCTAT TTTTGATAAT
ATCTTTGTAA TTTTTAGAAG ATTTCAATCT GGAAAGCCTG TTTATGAAGC TGATAGAAGC
CAAATACATT ATAGGCTACA AGAAAGAGGA ATGTCTGTAA AGCAAATTGT GTCATATATA
TGCATACTAA GTGGATGTTT AAGTTTAGTA TCATTATTAA TAATTATGAT AATATTATAA
|
|---|
| Protein sequence | MIKYLIVMLI PFVIVYLLMP KFIEFANEKG FVDKPTGRKK HDKLTPLIGG VVMYIGFFAT
YLFGIDSTRQ LSQTFIIFIA STLVIIIGVI DDYYKGKGKE FPIYPRVIIQ ILAATMVFKA
GIVFRGITNP FTGEFTQFSG WIQYILTITW IFGVTTVINW SDGMDGLAGS ISIISAMTMF
VVALAKGQFN SAYMSITLVG SILAFLRYNR HPARVFMGDS GANFLGFILA IIALEGAFKQ
ATALSILVPV LALGVPIFDN IFVIFRRFQS GKPVYEADRS QIHYRLQERG MSVKQIVSYI
CILSGCLSLV SLLIIMIIL
|
|---|
| |