Gene CPF_1788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1788 
Symbol 
ID4202717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp2015953 
End bp2016744 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content30% 
IMG OID638082660 
Productanaerobic sulfite reductase subunit B 
Protein accessionYP_696224 
Protein GI110798571 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism 
COG ID[COG0543] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 
TIGRFAM ID[TIGR02911] sulfite reductase, subunit B 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.920416 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAATA TTTTAACACC TAAATCATGT GAAATAATAG ACATAGTTAA GGAAACTGAC 
AAAGAATGGA CTTTTAGAAT AGCTTCTGAT GTTGTTCCAG AACATGGTCA GTTTTTAGAA
TTATCTCTTC CTAAGGTTGG AGAAGCACCT ATTTCTGTTA GTGGATTTGG ACCAGGGTAC
TTAGATTTTA CAATAAGAGC AGTAGGTAAA GTTACTGATG AAATATTTAA ACTAAAGCCA
GGAGATAAGA TTTCTTTAAG AGGAGCTTAT GGAAAAGGTT GGCCTGTAGA ACAATTTAAA
AATAAAAATG TAATAATAGT AGCTGGGGGT ACAGGAGTAG CACCAGTTAG AAGTTTAATA
AATAAATTTT ATGATGAACC AAACTATGTT GAAACTTTAA GTTTAGTATT TGGATTTAAA
AATTCAGAAG GAATACTTTT TAAAAATGAC TTAGATAGAT GGAATGAAAA ATTCAATACT
ATTTATACTT TAGATAATGA TACAAAAGAA GGATGGGAAA CTGGACTTGT AACAGTTCAT
TTAAATAAAT TACCTCTAGA AAGTTTTGGA GATAACTATG AGGTTATCAT AGTTGGACCT
CCTGTAATGA TGCATTTTAC AGCTTTAGAA TTCTTAAAAC TTGGAGTTCC AGAAGATAAG
ATATGGGTTT CATTTGAAAG AAAAATGTCA TGTGCAGTAG GAAAATGTGG ACATTGTAGA
ATAAATGAAA CATATGTATG TCTTGAAGGA CCTGTATTTA ACTATACAAA AGCAAAGACA
TTATTAGATT AG
 
Protein sequence
MENILTPKSC EIIDIVKETD KEWTFRIASD VVPEHGQFLE LSLPKVGEAP ISVSGFGPGY 
LDFTIRAVGK VTDEIFKLKP GDKISLRGAY GKGWPVEQFK NKNVIIVAGG TGVAPVRSLI
NKFYDEPNYV ETLSLVFGFK NSEGILFKND LDRWNEKFNT IYTLDNDTKE GWETGLVTVH
LNKLPLESFG DNYEVIIVGP PVMMHFTALE FLKLGVPEDK IWVSFERKMS CAVGKCGHCR
INETYVCLEG PVFNYTKAKT LLD