| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_1776 |
|---|
| Symbol | |
|---|
| ID | 4202938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 2000732 |
|---|
| End bp | 2002501 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 638082648 |
|---|
| Product | ABC transporter, permease/ATP-binding protein |
|---|
| Protein accession | YP_696212 |
|---|
| Protein GI | 110800219 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.184019 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAAA TAAATGAGAA AAAAACTCAT AAGTGGAAGA CTATAAAGAG ACTTCTAAAA
TATGTGGCTC CATACAAGTG GAAAACTATA GGAATAATAT TAATGCTTTT ACTTATTATG
AGTTGTAATA CATTAAATCC ATACTTAATG AAGGTTTCTA TAGATAAATT TGTTTCTGCT
AAGGATGTAA ATGGATTACT TGGCATAGGA GCAGTTTTAC TTTTATTAAA TATAATAGCA
ATGATACTTT CAAAAATAAG AATGCTATCT ATGAGTAAAA TAACAAATCA AATATTAGTA
AATATAAGAC ATGAACTTTA TACTCATATA CAAACTTTAA GTTTTTCCTT TTTTGATAGT
AGACCAGTAG GTAAGATTTT ATCAAGGGTA GTTGGTGATG TTAATGCATT AAATAACTTG
TTAAATCATA GTATTGTTAA TTTAATACCA AACCTTTTTA CAATTTTACT AGTAATTTTT
ATGATGTTTT TAATGGATCC AAGTCTTACT TTGGTTTGTT TAACAGTTTT ACCATTTCTT
TTTGCGGGAA TGTTTTTTAT AGAAATAAAA TCAAATAAAA GGTGGAGAGT TTTTAGGGAA
AATAGATCAG CTCTTTTAGG TTATACCCAT GAAGCATTTT CAGGAATGAA AGTGGTTCAA
GGATTTAATA GAGAAGAGTA TTCAAGAGAA AAATTTGAAA ATCATCTAGA AGGACATGCA
GGTGGTTTTT TACATGCAGT TAGGCTTCAA GATTATTTTT GGCCTACAGT GGATATATGC
AGAGGTTTTG GAATTGCAAT AGTATTATTT GCAGGGTATA AATTAACAAG AGGTGGAAAT
TTATCTTTAG GAACCTTAAT GGCCTTCATA ATGTATATTG AAATGCTTTG GAGACCTATA
ATGAACTTAT CAGCCTTTTA TAATGCTTTT GTTACTAATC TTTCAGCAGC AGAAAGAATT
TTTGATATTA TGGATACTAA GAACCACATG GTAAATAATA AGGCAGAAGA AAAACTTCCA
AAGATAAAAG GAGAAATTCA TTTTGAAGAT GTTACTTTTT CCTATGATAA TGATGGAAAT
CATGCATTAA AAGATGTAAC ATTCACCTTA AATCCAGGAG AAAAAATAGC CTTAGTTGGA
GAAACAGGAG CTGGAAAAAC TACAATAACA AACCTTATAA GTAGATTTTA TGAGCCAACT
AAAGGAAAAA TATTTATAGA TGGTATTGAT ATAAGTACTG TAGATGTAGA AAGTCTTAGA
AGTCAGATGG GAATAATGCT TCAAGATTCA TTTCTTTTTG CTTCTTCTAT TAAGGAGAAC
ATACGCTATG GGAAATTAGA TGCTACTGAT GAGGAAATAA TCCAAGCTGC AAAGGCTGTA
AATGCTCATA ACTTTATAGA AAAACTTGAA GAGGGATATA ATACAAATGT TAATGAAAGA
GGATCAAGAC TTTCATTAGG ACAAAGGCAG TTAATAGCAT TTGCTAGGGC CTTAATTTCA
GATCCAAGAA TACTTATATT AGATGAAGCA ACTGCTAATA TTGATACTGA AACAGAAAGG
CTAGTTCAAG AAGGAATAAA GAAACTAATG GAAGGAAGAA CTTCTATAGT TATAGCACAT
AGACTTTCTA CCATAAGAGA TTGTGATAAA ATATTTGTTC TTTCCCATGG AAAAATTGTT
GAAGATGGAA CTCATGAAGA GTTATTAAAT AGAAAAGGAT ATTATTATAA TCTGTATTGT
GCTCAATATA GCTTCTTAAA AGAAGAATAG
|
|---|
| Protein sequence | MEEINEKKTH KWKTIKRLLK YVAPYKWKTI GIILMLLLIM SCNTLNPYLM KVSIDKFVSA
KDVNGLLGIG AVLLLLNIIA MILSKIRMLS MSKITNQILV NIRHELYTHI QTLSFSFFDS
RPVGKILSRV VGDVNALNNL LNHSIVNLIP NLFTILLVIF MMFLMDPSLT LVCLTVLPFL
FAGMFFIEIK SNKRWRVFRE NRSALLGYTH EAFSGMKVVQ GFNREEYSRE KFENHLEGHA
GGFLHAVRLQ DYFWPTVDIC RGFGIAIVLF AGYKLTRGGN LSLGTLMAFI MYIEMLWRPI
MNLSAFYNAF VTNLSAAERI FDIMDTKNHM VNNKAEEKLP KIKGEIHFED VTFSYDNDGN
HALKDVTFTL NPGEKIALVG ETGAGKTTIT NLISRFYEPT KGKIFIDGID ISTVDVESLR
SQMGIMLQDS FLFASSIKEN IRYGKLDATD EEIIQAAKAV NAHNFIEKLE EGYNTNVNER
GSRLSLGQRQ LIAFARALIS DPRILILDEA TANIDTETER LVQEGIKKLM EGRTSIVIAH
RLSTIRDCDK IFVLSHGKIV EDGTHEELLN RKGYYYNLYC AQYSFLKEE
|
|---|
| |