Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1766 |
Symbol | |
ID | 4202628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 1990693 |
End bp | 1992060 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 25% |
IMG OID | 638082638 |
Product | putative alginate biosynthesis protein AlgI |
Protein accession | YP_696202 |
Protein GI | 110799298 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1696] Predicted membrane protein involved in D-alanine export |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.004681 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTATTTA GCAGTATTAT GTTTATATTT AGATTTTTAC CAATAATGTT TATAATATAC TACCTAACTC CAAATAAATT TAAAAATTTA TCTCTATTAA TATTAAGTTT AGTATTTTAC TCATGGGGAG AACCAAAGTA TTTTATTATA ATGCTTTTAT CCATAGGAGT AGATTATTCA ATAAGTATTT TTATTGAAAA ATATAAGAAG AAAAAAATAA TCACTAAGGT ACTTTTATTT TGCTCTCTTA TATTTAATTT AGGTATGCTC ATATTATTTA AATATTTGAA TTTCTTTATT GAAAATATAA ATTTAGTTCT TGGGACTTCT TTATCATTAA TATATTTAAC CTTACCTCTA GGAATAAGTT TTTATACCTT TCAGACTATG TCATATACCA TTGATGTATA TAGAGGAAAG ATAAAGGCTG AAAGAAATAT AATAAACTTT GGGGCTTATG TATGTCTTTT TCCACAGCTT ATAGCAGGTC CCATAGTAAA ATATTCAGAC ATAAAAAATG AACTTAAAAA TAGGAAAATT AAAGTTAATC AAGTTGAAGA AGGAATTACT GAATTTATAA TAGGAATGGG CAAGAAGGTT TTAATAGCTA ATAATATAGG TCTTCTATGG AATGAGATTC AAGAACTTGG AATAAGTTAC GTGTCAACTC CTTTATTATG GCTTGGTGTA ATAGCATTTT CTTTTCAGAT TTATTTTGAT TTTAGTGGAT ATTCCTCTAT GGCCATAGGA CTTGGAAAGA TGCTTGGATT TGATTTTCCT GAAAATTTTA ATTTCCCATA TATATCAAGA AGTATTACTG AGTTTTGGAG GAGATGGCAT ATTACCCTTG GCGCTTGGTT TAAGGAATAT GTTTATATTC CTATGGGAGG GAATAGATTA GGGAAAAATA GGACAATATT AAATCTTTTT ATTGTATGGT TTTTAACTGG TTTTTGGCAT GGAGCAAAAT ATAATTTTAT AATATGGGGA TTATATTTTT TCTTTCTTAT TGTTATAGAA AAAGTTTTTT TAATGAATTA TTTAAATAAA TATAAGATTT TTTCTCATAT ATATGCAATA GTTTTTATAG TTTTTGGGTG GGCACTTTTT TCCTTTGAGG ATTTACTTAG TATAAAGTAT TTATTTAGAA TGAATTTTTC TTTAGATTTT ATTTATTATT TAAGAAACTA TTTTTTAGTT ATTATAATAG CTATTTTAGG ATCTACAAAG TTAATAAATA ATATTTATGA GAGATTCATA AAGAAAAATA AATCTTTAGA ATGCTTAGTA TTAATGATGG TGTTTATATT ATCAGTAGCA TATTTAGTGG ATTCTACTTA TAATCCATTT CTTTATTTTA GATTTTAG
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Protein sequence | MVFSSIMFIF RFLPIMFIIY YLTPNKFKNL SLLILSLVFY SWGEPKYFII MLLSIGVDYS ISIFIEKYKK KKIITKVLLF CSLIFNLGML ILFKYLNFFI ENINLVLGTS LSLIYLTLPL GISFYTFQTM SYTIDVYRGK IKAERNIINF GAYVCLFPQL IAGPIVKYSD IKNELKNRKI KVNQVEEGIT EFIIGMGKKV LIANNIGLLW NEIQELGISY VSTPLLWLGV IAFSFQIYFD FSGYSSMAIG LGKMLGFDFP ENFNFPYISR SITEFWRRWH ITLGAWFKEY VYIPMGGNRL GKNRTILNLF IVWFLTGFWH GAKYNFIIWG LYFFFLIVIE KVFLMNYLNK YKIFSHIYAI VFIVFGWALF SFEDLLSIKY LFRMNFSLDF IYYLRNYFLV IIIAILGSTK LINNIYERFI KKNKSLECLV LMMVFILSVA YLVDSTYNPF LYFRF
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