Gene CPF_1764 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1764 
Symbol 
ID4202299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand
Start bp1986215 
End bp1989496 
Gene Length3282 bp 
Protein Length1093 aa 
Translation table11 
GC content28% 
IMG OID638082636 
Productsensor histidine kinase/response regulator 
Protein accessionYP_696200 
Protein GI110800980 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG3292] Predicted periplasmic ligand-binding sensor domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.412354 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAATATAA AAAAATTAGT TATAAGATAT GCTTTTCTCT CCTTAATACT AATACTAATT 
CAAGGCAAAA ATGTTTTTGC TTTAGGAGAA TCAGAAGTAA GATTCAACAA TTTAACATTA
AAGGACGGAT TATCCCAATC TACTGTAAAT AAGATAATTC AAGATAATAA AGGGTATATG
TGGTTTGGGA CATCAGATGG ATTAAATAAA TACAATGGAC ATGAGTTTGT TATTTTTAGA
GAATTAGTAA ATGATAAAAA GAGTATTAAT TCAAGTTTTA TATCAGCTCT AATAGAATAT
GACAATGATA ATATTCTTGT TGGAACTAGC AAGGGTATAA GCAAAATAAA TGTAATAACA
AATGAAGTAA GTAGAATGTT TGAGGATGAA GAGGGAAAAA GCAAGCTATC AAATAATAAT
ATATGGGATA TATTAAAGCA TAGTGATGGA ACTATTTGGA TAGCTACTAG AAAAGGGTTA
AATATTTATA ATCCTAAAAC AGGTGATATG TATCAAATTT TTAAAGATAC AGAACCTAAG
GGATTAAAAA GCAATGTAGT TACTTCTTTA TGTGAGGATA AATACGGAAA TGTATGGGTT
GGAACAAGCG AAGGTTTAAG TGTAATTAAT ACAAAGACTA AGGAGATTCA ACCTATAAAT
GATATATTAG ATAATGATAA TTCGGCAATT TCTAATATTT ATAGAGATAG AGATGATAAT
ATATGGATAG TAACAGATAA TCATATTATG TTAGTATCAA GCAATTATAA AGATATTACT
TATTTTGATA AAGAATTAGA GTCTTTTAAA ATATCTCCAG ATAGTGTAAA TGCCATTTAT
GAAGATAAAT ATAATAATTT ATGGATATCA ACTCAAAATG GATTATTAGA ATATAATAAA
GAAAATAAAA AAATGCATCT TTTTGAAAGC AGGTATTATG ATGATACTAG TTTAGTTAAC
GATAATGTAT TAACTGCATA TGAAGATAGA AGTGGATTGC TTTGGTTTGG TACTTATAAT
GGAATAAGTT TATTAAATCC TAAGCAGCCT TTTAAGCATT ATAGAAGAGA GCCTGATAAG
GAAAATACTA TTAGTGATAA TAGTATGAGT GGAATTTATA AAGATTCTGA TGGAATGTTA
TGGCTTGGAA CTAACTCAGC AGGATTGAAT AAATTAAATA CTATGACTGG GGAAGTTACA
AATTTTTATA GTAATAATAG TGATGAAAAT ACCTTAAGTA GTAATGTAGT TTGGCAAATA
TGTGAAGCTG ATAAAGATAA TTTGTGGGTT GCAACTCAAG GTGGAGTTAA CAAGATAAAT
AAAAAAAGTG GAAATGTTGA AAGATTAAAG TATCCAGATA ATATGAGAGA ACGAAATAAA
ATGGATGCTA GAAATGTTTT TGTGGACAAG GATGGATTAT TGTGGATAGG AGCAAGAGGT
GGATTACAAT CCTATGATGA TAAAACAGGA ACTTTCACTG ATTATTCCAA TGTTTTTAAG
GCTGTAGGTA TAGTTGAGAA TGCTGTAACA AGTATTTCAC AAGATGAAGA GGGATTTTTA
TGGATTACTA TAGGTATTGA TGGTGGTGTA GTAAAGTTTG ATAAGGATAA GGGCGTACTA
AAAAGCTATT TAAATAATAG TTTTGATAGC AATAGTCTTA TAAATAATGG AGTGCGTTGC
TTAGAAAAAG ATTCAAAGGG AAATGTTTGG ATTGGAACTG AAGCGGGATT AAGTAAACTA
GATCCTAAAA CTGATAAATT TACTAACTAT ACTGTTGTAA ATGGATTAGC TAATAATTTT
ATATATGGAA TACTTATAGA CGAAGAAGAC AATCTTTGGA TAAGTACAAA TGATGGTCTA
TCTAGATTTG ATCAAAAAAC AAATAAGTTT ATAAATTATA CTGCCATGGA TGGGCTACAA
AGTAATGAGT TTAACGGCAG ATCTTATTTT AAAAGTAAAG ATGGAGAAAT GTTTTTTGGT
GGAATAAATG GGGTAACTGC ATTTTATCCT AAGGACGTTT TAAAATTATC AGACAATAGA
AATAAGAGCA AAGTAGTAAT AGATGAAATT AAGGTTAATA ATAAAACTTA TCCATACTAT
GGGGGAACTC TTAGCTTAAA ATATAATGAA AATAATATAT CCATTGATTT CTTTTTGCCA
GATTATTTAA ATACAACAAA AACTACTTAT GAGTATAAGT TAGAAGGTGT TGATGAAGAG
TGGACTTTTG CTAATAAAAG AAATAATGCT AATTATGCTA CCTTAGATTC TGGAACATAT
AAGGTTTTAA TTAGAGCCAG GGATAACCAT GGAGATTTAA CTCCAGTGAC TGCTCTAGAC
TTAAAGATTG CGCCACCACC ATGGCGTACA CCAACGGCTT ATTTAATATA TTTTTCAAGT
GCAGTAATAG TTATTTTCTT AATGTGGAGT TATGTAACTG CCTTAGAGAA AACTGTTAAG
AAAAGAGCTG AGCAACTTAA AAAAGAGGCT AAGGAAAAAG AAAAACTTTA TATAGAAAAA
GAGAAGCTTT ATAAAGAAGC AGCGGATCTT AAAGATGAGA TGATAAAAAG GCAAAAATTC
AAAAATGATT ATTTCGTAAA TCTTTCACAT GAGCTTAGAA CTCCATTAAA TGTGATATTA
GCTACAGTAC AGCTAATAAA ACTAAAGAAT AAGGAAGATT GCTTAGGAAA ATATCAAGTG
GAAGATTATA CTAATACTCT TAGAAATAAT GCTGATCATT TGCTTAAGAT AATAAATGAT
ATAATAGATT CATCTAAAAT AGAGTCAGGT GCATATAAAT TGAATATAGA AAAGCAGGAT
ATAGTTTCTT TAGTTGAGGA TACGGCTTTA AGTTTAAAAG CTTATATTGA AGAAAATAAT
TTAGATATTA TAATAGATCC TGAAATAGAA GAATTAGATG TAGAATGTGA TAAAAATGAG
ATTGAAAGAT GTGTTATAAA CCTTTTATCT AATGCTATAA AATATACTCA TGGATATGGT
ACAATTGAAG TTTTCATAAG AGAGTGTGAA AATGAAACTG TAGAAATTGC TATAAAAGAT
ACTGGAGTTG GAATATCTAA GGAGCAACAA AAGATTATAT TTGATAGATT TGTACAAGCT
GATAGCATAT CTAAAAAACA ATATAGAAGT AGTGGTATAG GCTTAACATT GGTAAAAAGT
ATAATAGAAC TTCACCATGG TACAATAAGA GTAGAAAGTG AACTTAATAA AGGAAGTACT
TTTATAATCA CATTACCTAT AAGACAAGAG AAAAGTAAAT AA
 
Protein sequence
MNIKKLVIRY AFLSLILILI QGKNVFALGE SEVRFNNLTL KDGLSQSTVN KIIQDNKGYM 
WFGTSDGLNK YNGHEFVIFR ELVNDKKSIN SSFISALIEY DNDNILVGTS KGISKINVIT
NEVSRMFEDE EGKSKLSNNN IWDILKHSDG TIWIATRKGL NIYNPKTGDM YQIFKDTEPK
GLKSNVVTSL CEDKYGNVWV GTSEGLSVIN TKTKEIQPIN DILDNDNSAI SNIYRDRDDN
IWIVTDNHIM LVSSNYKDIT YFDKELESFK ISPDSVNAIY EDKYNNLWIS TQNGLLEYNK
ENKKMHLFES RYYDDTSLVN DNVLTAYEDR SGLLWFGTYN GISLLNPKQP FKHYRREPDK
ENTISDNSMS GIYKDSDGML WLGTNSAGLN KLNTMTGEVT NFYSNNSDEN TLSSNVVWQI
CEADKDNLWV ATQGGVNKIN KKSGNVERLK YPDNMRERNK MDARNVFVDK DGLLWIGARG
GLQSYDDKTG TFTDYSNVFK AVGIVENAVT SISQDEEGFL WITIGIDGGV VKFDKDKGVL
KSYLNNSFDS NSLINNGVRC LEKDSKGNVW IGTEAGLSKL DPKTDKFTNY TVVNGLANNF
IYGILIDEED NLWISTNDGL SRFDQKTNKF INYTAMDGLQ SNEFNGRSYF KSKDGEMFFG
GINGVTAFYP KDVLKLSDNR NKSKVVIDEI KVNNKTYPYY GGTLSLKYNE NNISIDFFLP
DYLNTTKTTY EYKLEGVDEE WTFANKRNNA NYATLDSGTY KVLIRARDNH GDLTPVTALD
LKIAPPPWRT PTAYLIYFSS AVIVIFLMWS YVTALEKTVK KRAEQLKKEA KEKEKLYIEK
EKLYKEAADL KDEMIKRQKF KNDYFVNLSH ELRTPLNVIL ATVQLIKLKN KEDCLGKYQV
EDYTNTLRNN ADHLLKIIND IIDSSKIESG AYKLNIEKQD IVSLVEDTAL SLKAYIEENN
LDIIIDPEIE ELDVECDKNE IERCVINLLS NAIKYTHGYG TIEVFIRECE NETVEIAIKD
TGVGISKEQQ KIIFDRFVQA DSISKKQYRS SGIGLTLVKS IIELHHGTIR VESELNKGST
FIITLPIRQE KSK