Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1289 |
Symbol | cobT |
ID | 4202333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 1463088 |
End bp | 1464173 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 638082170 |
Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
Protein accession | YP_695735 |
Protein GI | 110799489 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00800623 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTAAATG AGGTGTTAAA AGGAATAGAA GGTTTAGATA ATGACATGAT TTTAAAAGCT AAAAATAGAG TAGATTCTTT AGCTAAACCT TTAGGAAGTT TAGGGAAGTT AGAAGATATA GCCATAAGGT TATCTGGAAT AACTGGGAAT ATGTTTAATA ATATTGATAA AAAGTGTGTG ATTATAATGT CTTCTGACAA TGGAGTTGAA GAAGAAGGAG TAGCCTCAGC ACCTCAATGT GTAACCTTAC TTCAAACAAA AAACTTTATA AAAGGTACTA CGGGAGTAGC TACATTGGCA AAATCTAATG GAACAGATTT AATGGTTTTT GATGTGGGAA TTAATTCAGA TGAAGTTGTA GAAGGAGTTA TAAATAGAAA GATATCAAAG GGAACTAAAA ATATTTATAA GGAACCAGCT ATGACTTATG AAGAAGCTAA AAAATCCTTA GAAATCGGAA TAGAAGCTGT AAAAATAGCT AAGGAAAAGG GATATAAAAT ACTTGGAGTA GGTGAAATGG GAATAGGAAA TACCACTACT TCAGCAGCAG TATTAAAAGC TCTTATTGGG TGTGAAACTT CTCAAGTAGT AGGAAAAGGT GGCGGAATAA ATAATGCTTC TTTTGAAAAG AAAAAAAGAA TTGTAGAAGA AGTGGTTAAA AAACATAATA TTAATTTTGA TGATCCTATT GATATTATTT CAAAGGTTGG AGGATATGAT ATTGGAGCAA TGACAGGTGT ATTTTTAGGA GCAGCTTTCT ATAGAATCCC TGTAGTGATA GATGGATTTA TATCCGTTGT GGCAGCTCTT TTAGCTAATA GATTAAATCC TTTAGTTAAA GAATTTTGTT TTACTTCTCA TAAATCACAG GAAATAGGAT ATGAGTTAGC TATAAAAGAG TTAGGTTTAG ATCCTATGTT AGATTTAAAT ATGAGATTAG GAGAAGGAAG TGGATGCCCA ATAGCTTTCT CAGTAATTGA TTTTGCAACA GCCATGATGA ATAATATGGC AACCTTTGAA GAAGGAAATA TAGATAACAG CTATTTAGAA GATGTAAAGG ATGAAGAATG TTATATTGTT CTTTAA
|
Protein sequence | MLNEVLKGIE GLDNDMILKA KNRVDSLAKP LGSLGKLEDI AIRLSGITGN MFNNIDKKCV IIMSSDNGVE EEGVASAPQC VTLLQTKNFI KGTTGVATLA KSNGTDLMVF DVGINSDEVV EGVINRKISK GTKNIYKEPA MTYEEAKKSL EIGIEAVKIA KEKGYKILGV GEMGIGNTTT SAAVLKALIG CETSQVVGKG GGINNASFEK KKRIVEEVVK KHNINFDDPI DIISKVGGYD IGAMTGVFLG AAFYRIPVVI DGFISVVAAL LANRLNPLVK EFCFTSHKSQ EIGYELAIKE LGLDPMLDLN MRLGEGSGCP IAFSVIDFAT AMMNNMATFE EGNIDNSYLE DVKDEECYIV L
|
| |