Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1245 |
Symbol | sdhB |
ID | 4203203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 1418694 |
End bp | 1419374 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 638082126 |
Product | L-serine dehydratase, iron-sulfur-dependent, beta subunit |
Protein accession | YP_695691 |
Protein GI | 110799908 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1760] L-serine deaminase |
TIGRFAM ID | [TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0325404 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATAATC TTTGTGTTTT TGATATATTA GGTCCAGTAA TGGTTGGACC ATCATCATCT CATACAGCGG GAGCAGCTAG ACTAGGAAAG GTAGCTAGAG CAGTTGCTGG AGAAAAAATT ATAGATGTTA AATTTTTGCT TCATGGATCT TTTGCTAAAA CATATAAAGG TCATGGAACT GATAAGGCTT TACTTGCAGG TATATTAGGA ATGAAGCCAG ATGATGAAAG GCTTAGAAGT TCATTAGCTA TTGCTAAAGA GGAAGGATTA AACTTTGAAT TTATAGAAAG AGATTTAGGA GATTACCATC CAAATACAGT TAAATTTGTT ATGGAGTGTG AATCTGGAAA AGTTTGCGAG GTATTAGGGT CATCAGTAGG TGGAGGAAGC ATAGAAATAG TTGAGGTAAA TGGAAATGAA GCTAATTTTA GTGGAGCATA TCCAACACTT ATTACATGTC ATGATGATAA ATTTGGTACT GTAAATAAAG TAACAAAACT TCTTCTTGAA CATGAAATTA ATATTGCTTT TATGAACGTT TCAAGAACTC AGAAGGGAAT GGACGCTACT ATGACTTTAG AAATAGATAA TAAGATTGAT GAATCTGTTA TAAAGAGAAT GGAAGAAATA GATGGAATAA AAAAAGTTAT ACTTATAAAT TTAGAAGAAG AGGAGAAATA A
|
Protein sequence | MNNLCVFDIL GPVMVGPSSS HTAGAARLGK VARAVAGEKI IDVKFLLHGS FAKTYKGHGT DKALLAGILG MKPDDERLRS SLAIAKEEGL NFEFIERDLG DYHPNTVKFV MECESGKVCE VLGSSVGGGS IEIVEVNGNE ANFSGAYPTL ITCHDDKFGT VNKVTKLLLE HEINIAFMNV SRTQKGMDAT MTLEIDNKID ESVIKRMEEI DGIKKVILIN LEEEEK
|
| |