Gene CPF_1164 details

Gene Information

• Locus tag: CPF_1164
• ID: 4203624
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1330169
• End bp: 1331968
• Gene Length: 1800 bp
• Protein Length: 599 aa
• Translation table: 11
• GC content: 27%
• IMG OID: 638082045
• Product: putative sensory box-containing diguanylate cyclase
• Protein accession: YP_695610
• Protein GI: 110800284
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2206] HD-GYP domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0260621
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTCAA ATTTATTAGA GGTATTATTA GATAACATAC CTTATTCAGT ATGGTTAATA 
GGAATAGATA GTAGATTTAT TTTTGTAAAT AAATATTACT CAAATGCTTT AAAGTTGAGT 
AAAGAAGAGA TAATTGGAAA GAGTTTAAGT GAAATTTATA CTAAAGAAGT GGCAGATGAA 
TATATTGGAA ATTATAAGTT AGTAATAGAA GAAGGAAAGC CAAAACTTTT TTCAGGATAT 
GAAAATGGAT TAGGATATCC AAATGGAGCT TTTCTAGAAT GTTATTTAGC ACCTATAAAA 
GAAAATGGAG AGATAAAGTG TTTTTTAGGA ATTCTTCAAG ATCAAAGTGA AAGAAAAAAG 
TATGAAGAAG AGCTCATAAA TCAAAAGGAA CTTTTAAATA CTATTGTGGA ATCTATTCCA 
GATGGGATTT ATCATAAAGA TAAGAATGGA AAATATTTAA AATGTAATGA TACTTTAGTT 
AATGAATATT ATAAAAAAAA TAGAGAAGAA ATAATTGGGA AAGACATAAA GCGTATTTCT 
AAAAAATCTT CTAATAGAAA TAGCCTTTTT AAGGGAGAAA AAATACTAGA TGATTTTATA 
GCTCAAGATA AAGAAGTTAT AAATACAAAA AAGAAAGTCA AGGAAAAAAT ACGAGTAAAG 
CTTAATAGAA AAGTAAAGTA TATAGAATCT ATTAAAGTGC CTGTTATAGA TAACAATGGC 
AGTGTAACAG GTATTGTAGG TGTAGTGAGA GATGTAACTG AGAATGTTGT TTTAGAAAAT 
AAATTAAAAA AAATGAGTTA CAGAGATAAA CTTACAGGAC TTTATAATAG AGCTTATTTT 
GATGAAAAGC TAGAAGAATT AAATAATGAA GAGTTTTTCC CTTTAAGCTT TGTAATGGGA 
GATTTAAATG GACTTAAGGT TATAAATGAT GCTATTGGAC ATTTAGAGGG AGATAAAATT 
TTAAAAGAAA TTTCAGGGGT AATAAAAAAT TCTTGTAGAA AAGATGATCT TATATTTAGA 
TGGGGTGGAG ATGAGTTTTG TATTCTTTTG CCTAAGACAA CAGAGGAAGA AGCAGAGGCT 
ATATGTAATA GAATAAGGAA AAATTGCAAG CTCAATCATA AAACTATAAT TCCTTTAAGT 
ATAGCACTTG GAGTATCTAG TAAAAAAGAG GCTAAAAAAC CAATAGATGA AGTTTTAGTA 
GAAGCTGAAG ATAAAGTTTA TAGAGAAAAA TTGGTGAATG AAAAACGTAT AAAAAAGAAT 
ATAATAGACT CATTAAATAA AGAGCTTTTT TTAAGACATG ATGATATTAA AGATCATATA 
AATAGAGTTA AAAAGTATGC TGTTGAACTA GGTAAGAAGA TGAACTTATC AGAAAAGGAA 
TTAAAAAAAT TAAAAATGCT AGCTAAACTT CATGATATAG GCAAAGTAGG AATTCCTGAG 
GAAATACTAT CTAAGCCAGG TGAGTTAACA AAAGAAGAGT ATGAAATAAT AAAAACTCAT 
GCTGAAAAAG GATATAGAAT TGCTATGTTT AATCCAGAGT TTAAAAAAAT AGCACCATGC 
ATATTAGCTC ACCATGAAAG ATATGATGGT ACTGGATATC CATTAGGACT AAAAGGTAAT 
GATATTCCAC TACTTGCTAG AATTATAAAT GTAGTAGATT CTTATGATGC TATGACAAAT 
AAAAGGGTCT ATAAAGGAAG CCTTAGTGCT GAAGAAGCTA AAAAGGAGCT TAAAAAGAAT 
TCTGGTACTC AATTTGATCC TATGATTGTA GAGGAATTTT TAGAGTTAAA AAGAATTTAA 

 

Protein sequence

MNSNLLEVLL DNIPYSVWLI GIDSRFIFVN KYYSNALKLS KEEIIGKSLS EIYTKEVADE 
YIGNYKLVIE EGKPKLFSGY ENGLGYPNGA FLECYLAPIK ENGEIKCFLG ILQDQSERKK 
YEEELINQKE LLNTIVESIP DGIYHKDKNG KYLKCNDTLV NEYYKKNREE IIGKDIKRIS 
KKSSNRNSLF KGEKILDDFI AQDKEVINTK KKVKEKIRVK LNRKVKYIES IKVPVIDNNG 
SVTGIVGVVR DVTENVVLEN KLKKMSYRDK LTGLYNRAYF DEKLEELNNE EFFPLSFVMG 
DLNGLKVIND AIGHLEGDKI LKEISGVIKN SCRKDDLIFR WGGDEFCILL PKTTEEEAEA 
ICNRIRKNCK LNHKTIIPLS IALGVSSKKE AKKPIDEVLV EAEDKVYREK LVNEKRIKKN 
IIDSLNKELF LRHDDIKDHI NRVKKYAVEL GKKMNLSEKE LKKLKMLAKL HDIGKVGIPE 
EILSKPGELT KEEYEIIKTH AEKGYRIAMF NPEFKKIAPC ILAHHERYDG TGYPLGLKGN 
DIPLLARIIN VVDSYDAMTN KRVYKGSLSA EEAKKELKKN SGTQFDPMIV EEFLELKRI