Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_1076 |
Symbol | |
ID | 4203697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 1226670 |
End bp | 1228760 |
Gene Length | 2091 bp |
Protein Length | 696 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 638081957 |
Product | [Fe] hydrogenase |
Protein accession | YP_695522 |
Protein GI | 110799819 |
COG category | [C] Energy production and conversion [R] General function prediction only |
COG ID | [COG1592] Rubrerythrin [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
TIGRFAM ID | [TIGR02512] hydrogenases, Fe-only |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.723256 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGTAAAC ATTTAGCTAC GGATATACGT GTAGCTATTG AGAAGGATAA TCCATCTATT TGTAGAGATG AAGAGAAATG TATAAAATGT GGTTCATGCA AAAATATATG CACAGATTAT ATAGGAGTAA ATGGTCATTA TTCTTTGGAG AAAACTAATG ATACTGCTGT TTGTATAAAT TGTGGTCAAT GTGCGAATGT ATGCCCAACA TCTAGTATTA CAGAGGTTTT TGATTATAAA AAGGTACAAG ATGCGATAAG TGATAAAGAT AAAATAGTCA TAGTTTCTAC GTCGCCTGCT GTTAGAGTAT CTTTAGGTGA AGAATTTAAT ATGAATGATG GAAGTTTTGT TCAAGGTAAA ATGATAGCAT TACTTCGTAA GTTAGGTTTT GATTATGTTC TTGATACTAA TTTCGCTGCT GATATGACTA TAGTTGAGGA GGCAAGTGAA TTAGTAGAGC GTATAACTAA AAATAATAAA CCTCTACCTC AATTTACTAG TTGTTGTCCG GCTTGGGTAA AATATGCTGA AACCTTTCAT CCAGAAATCT TAGAGCATAT TTCAACTTCA AAGAGTCCTA TAGGTATGCA AGGACCTACA ATAAAGACTT ATTTTGCAAA GAAGATGGGA ATTGATCCTT CTAAGATTGT AAATGTAGCC TTAACGCCAT GTACAGCTAA AAAGTTTGAA ATCAAAAGAG AAGAAATGAA TGCATCAGGT AGATATTATG GCATAGAAGA TATGCGTGAT ATGGACTATG TTATAACAAC TAGGGAAGTA GCTATTTGGG CTAAAGAAAA AGAAATTGAT TTTAATTCTT TAGAGGATAG TAACTTTGAT AAATTAATGG GAGAAGCTTC AGGGGCTGGT GTTATATTTG CTAATACAGG TGGAGTTATG GAAGCTGCTT TAAGAACAGC ATACAAATAT ATTACCAAAG AAGATCCACC TAAAGATTTT TATGATTTAG AGTCTGTAAG AGGTATTGAA GGTGTTCGTG AAGCTAGTTT TAAAATAAAT GACTTAGAAA TAAACATAGC TGTTATTTAT GGAACTGAAA ATGCTTTAAA GTTTATTTCA AAGATAAAAA ATTCGGATAA GAAATATCAC TTTATTGAGG TTATGACTTG TCCAGGCGGA TGCATAGGTG GAGGGGGACA ACCTAAAGAT AAAAAATTTG AGGGTGATAA ACTTAGAGAA AAACGTATAG ATGGATTATA TAAAAGAGAT TCAAGCATGA AATTAAGAGT TAGCTATGAA AATGAAGAGA TTAAAAAGTT ATATGAGGAG TTTTATGAAA AACCTTTAAG CAATCTTGCT GAGGAAATGT TACATACAAC TTATTTTGAT AGAAGTAAAG ATTTAGGAGG AGAAAAAATG AGTGAATCAG TAAAATATCG TTGTACAGTT TGTGGATATA TACAAGAAGG AGAATTACCA GAAGGATTTA TATGTCCAGT TTGCAAGAGT CCAGCTTCAG CCTTTGTAAA AGTTGAAGAG AAATCAGAGG TAGATGATAA AGATTCTAAT AAATCAGAAT CATCTAGTGA AAGTAGTAAT AAATATAAAG GAACAAAAAC AGAAAAGAAT TTAATGGATG CATTAGCAGG GGAGTCCATA GCTAGAAATA AATATACATT CTTTGCAGAG GTAGCCAAGA ATGAAGGATA TGAACAAATA TATGAACTAT TCTTAAAAAC AGCTGGCAAT GAAAGAGAAC ATGCTAAACT ATGGTTTAAG GAGTTAGGAT ATTTAGGAGA TACTAAAGAA AATTTATTAC ATGGGGCAGA AGGAGAGCAT TATGAATGGT CAGATATGTA TGCTAGATTT GCAAAAGAGG CTGAAGAAGA GGGATTTTTT GATTTAGCAG AAAAATTTGT AGAGGTTGCT AAAATAGAAA AATCTCATGA AGATAGATAT AGAAAGCTTT TAAACAATAT AAAGATGAAA AAGGTATTTG AAAAATCAGA AGAAACTATG TGGGAATGCT TAAATTGTGG ATATCTTGTT ATTGGTAAAA AGGCTCCAGA GGTTTGCCCA GTATGTAATT ATGCCAAAGG ATTTTTTGAA GTAAGAGCTG AAAATTATTA A
|
Protein sequence | MGKHLATDIR VAIEKDNPSI CRDEEKCIKC GSCKNICTDY IGVNGHYSLE KTNDTAVCIN CGQCANVCPT SSITEVFDYK KVQDAISDKD KIVIVSTSPA VRVSLGEEFN MNDGSFVQGK MIALLRKLGF DYVLDTNFAA DMTIVEEASE LVERITKNNK PLPQFTSCCP AWVKYAETFH PEILEHISTS KSPIGMQGPT IKTYFAKKMG IDPSKIVNVA LTPCTAKKFE IKREEMNASG RYYGIEDMRD MDYVITTREV AIWAKEKEID FNSLEDSNFD KLMGEASGAG VIFANTGGVM EAALRTAYKY ITKEDPPKDF YDLESVRGIE GVREASFKIN DLEINIAVIY GTENALKFIS KIKNSDKKYH FIEVMTCPGG CIGGGGQPKD KKFEGDKLRE KRIDGLYKRD SSMKLRVSYE NEEIKKLYEE FYEKPLSNLA EEMLHTTYFD RSKDLGGEKM SESVKYRCTV CGYIQEGELP EGFICPVCKS PASAFVKVEE KSEVDDKDSN KSESSSESSN KYKGTKTEKN LMDALAGESI ARNKYTFFAE VAKNEGYEQI YELFLKTAGN EREHAKLWFK ELGYLGDTKE NLLHGAEGEH YEWSDMYARF AKEAEEEGFF DLAEKFVEVA KIEKSHEDRY RKLLNNIKMK KVFEKSEETM WECLNCGYLV IGKKAPEVCP VCNYAKGFFE VRAENY
|
| |