Gene CPF_1040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1040 
Symbol 
ID4201632 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp1188620 
End bp1189324 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content32% 
IMG OID638081921 
Producthypothetical protein 
Protein accessionYP_695486 
Protein GI110801131 
COG category[S] Function unknown 
COG ID[COG3382] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0178906 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGT TTATTATTGA GGATGATTTT TGGGAGCTAT TCCCTAATGC AAAGATAGGT 
ATTATCACTT GCAATGGCAT AGATAATACT ATAAAAGATG AGAACCAATA CAAGGACATG 
ATTTCTCAAG GAGAAAAGGA AGCTTTAACT CACTTGCCTA ATGAAGAATT TAGCAGCAAT 
GAAGTTATTA AGGTATGGAG AGATGCATTT AAGAAGTTTA AGACTAAAAA AGGAGCAAGG 
TCATCAATTG AAGCTTTATT AAAGAGAGTT TCTACTGGTA AAGGATTAGG AACAATTAAC 
CCACTAGTTG ATATTTATAA CTCTATATCA TTAAAGTATG CCATGCCTTG TGGTGGAGAG 
AATATGGATA AGTTTATTGG AGATATAAGA TTAACTAAGG CAACAGGAGA TGAAAGTTTT 
ATTACCTTAG GATCAGATAA AAGTGAGCCA CCCTATGAGG GAGAATTAGT TTATAAAGAT 
GATGAAGGAG CTATTTGCAG ATGCTGGAAT TGGCGTGAAT CAGTAAGAAC TATGTTAACA 
GAAGATACAA AAAATGCTTT CTTATGCATT GAGTTAGTTG ATGAAAATAG AGAAAAAGAT 
TTTGAAAATG CCTTAAAAGA GTTATCTCAA TTAGTAGAGG AAAACTTAGG TGGAAAATCT 
GAGATTTCAA TACTTCATAT TAATAATAAG GAAGCTATAA TTTAA
 
Protein sequence
MKKFIIEDDF WELFPNAKIG IITCNGIDNT IKDENQYKDM ISQGEKEALT HLPNEEFSSN 
EVIKVWRDAF KKFKTKKGAR SSIEALLKRV STGKGLGTIN PLVDIYNSIS LKYAMPCGGE 
NMDKFIGDIR LTKATGDESF ITLGSDKSEP PYEGELVYKD DEGAICRCWN WRESVRTMLT 
EDTKNAFLCI ELVDENREKD FENALKELSQ LVEENLGGKS EISILHINNK EAII