Gene CPF_0401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_0401 
Symbol 
ID4201080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand+ 
Start bp482310 
End bp482798 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content30% 
IMG OID638081285 
ProductPTS system mannose/fructose/sorbose family IIB subunit 
Protein accessionYP_694858 
Protein GI110800810 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3444] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 
TIGRFAM ID[TIGR00854] PTS system, mannose/fructose/sorbose family, IIB component 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCGTAA ATATTGAAAT GATGAGAATT GATGAAAGAT TAATTCATGG ACAAGGACAA 
ATGTGGTTAA ATTCATTAGG AGTTAATACT GTAATAGTTG CAAACGATAT TGCTAGTGAA 
GATAAAATAC AACAAACATT AATGAAAACT GTTGTACCAA AATCAATAGC TATGAGATTT 
TTCTCAATAC AAAAAACTTG TGAGTTAATA CACAAAGCAT CACCACAACA AAAAATCTTC 
TTAGTTTGTA AAACTCCAGA GGATGCATTA AAACTAATTG CAGGTGGAGT ACCAGTTAAA 
GAAATAAACA TAGGAAATAT ACACAATGCT GAAGGTAAAG AGCAAGTTAC TCGTTCAATT 
TTCTTAGGAA AAGAAGATAA AGATGCATTA AGAGAATTAT CAGAAAAGTA TAATGTTAAG 
TTTAATACAA AAACAACACC TAGAGGTGAC GATGGAGCAA TGCAAGTAGA TATAACTAAA 
TATCTATAG
 
Protein sequence
MGVNIEMMRI DERLIHGQGQ MWLNSLGVNT VIVANDIASE DKIQQTLMKT VVPKSIAMRF 
FSIQKTCELI HKASPQQKIF LVCKTPEDAL KLIAGGVPVK EINIGNIHNA EGKEQVTRSI 
FLGKEDKDAL RELSEKYNVK FNTKTTPRGD DGAMQVDITK YL