Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_0394 |
Symbol | |
ID | 4203299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 473690 |
End bp | 476701 |
Gene Length | 3012 bp |
Protein Length | 1003 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 638081278 |
Product | polysaccharide lyase family protein 8 |
Protein accession | YP_694851 |
Protein GI | 110801222 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGAAT CTAGAAAAAA ACTTAACAGA CTTATATCAA CGGCAATTGT AAGTTGTATG GTTATGGGAG CTTCCTATGA GAATGTTTTG GCACTTGAAA ATAAGAGTCA AAATAATTCT GAAAAGGTAG TGAAATATGA CAACGAAGCT GAGTATATTA AAAACATTAG ATTAAGATGG AAGGAGGATT TAGTAGGTAA TTCTTCTTTA GATACAAGTA ATGCTACAAT ATCTAAGAAG ATAATAAGTT ATACAAATAA TACAGACAAA TTAGTAGCAA AACTTAATAT GGATCCTAAC GCTCAATGGC TTTGGGAAGA TTTAAAAGAT TATAAACAAA ATCCAGCTAG AATAACATCT ATGTTCAATA ACTTAGTAAC AATGTCTATG GCATATAGCT TACCTAATAA TAAGTATTAC AAAAATGAAG ATTTGAAAAA TAAGATAATA TATTCCTTAG ACTGGATCAA TAAAAATGCT TACAATGAGA ATATTGACCA GTATGGCAAC TGGTGGGATT GGATGATTGG AATACCAGCA AGATTAAATA ATATTGTTGT TTTAATGTAT GATGATTTAA CTGAAGAACA AGTTAAAAAT TATATGAATG CAATACAAAA ATTCTTACCA AGTATTGAGC CTGGAAGTAA ATATCATACA GGAGCAAATT TAGCAGATGT ATGTATGAAT AAGTTATTGC AAGGTGTCAA TGAGAATGAT CCAGAAAAAA TTAAAGAAGC ATCAGAGGAT ATAGTTGGAG TTTTTGATTA TGTAACTAGT GGGGATGGAT TCTATAAGGA TGGTTCATAT CTTCAACATG GAATGGTAGC ATACACAGGT TCATATGGAA ATGTTCTTAT TGAGAAAATA TCTAATATAA TGTTTTTATT AGAAAAAACT CCATGGTCAA TAAAATCTGA AAGTAAAGAT AACGTTTATA AGTGGATTTT TGAGAGTTTC AATCCAATTA TATATAAAGG ATACGTTATG GACATGGTTA GAGGAAGAGC AATATCAAGA TATAATGCTA ATGGATACTT ACAAGCATCT GGAATTATTG AAGGTATGAT TAAAATTGGA ATGATTTCTG ATGGAGATAA GGCTAGTGAA ATAAATGCTC TAGTTAAAAA ATGGGCTACA GAAGCTAAGA GTGTATTAGA TTTTGGAGCA AGATTTAAGT CAATTAATGT AATAGGTGAA TTCTATGGAA TTATGAATAA TGACAATATA AAACCTTTAG AAGAAGGTGA TAAGCATTAT GCATTAAATA GTATGGACAA GACTGTTCAT AAAAGAGAGA ACTTCGCTTT AGGTATATCA AGAAGTTCAA GTAGAATTAG TAAATATGAA TTCATGAACA AGGAAAATTT AACACCATGG TTCCAAGGGG ATGGAATGAC TTATTTATTC AATAATGATT TAAATCAATT CTCAGGAAAT TTTTGGGCTA CAGTAGATCC ATATAGAATG CCAGGTACAA CTGTAGACAC TAGAAAAAGA GAACCAAAAG AAATATTACC AGGGTTAGAT CCAGGAGCAT CACAACAAAA TGAAATTTAT TATGAATTAG GAAAGAGTAA TTGGTCTGGT GGAAGTAAGT TAGGAGCTTA CGGAGTAGCT GGAATGGAAA TAGATAATAA GTACGATTCC TTAAAAGCTA AGAAATCTTG GTTTATGTTT GATGATGAAA TAGTTGCCTT AGGTTCAGGA ATAACTAATC CAGAAGATTT TGAAACTGAA ACAATAGTTG AAAATAGAAA GATAAAAAGT GATGGATCAA ATAAATTTAT AGTAGATGGA AAAGAAAGAG TAAGTAAATT AAAAGAAAAA GATAAAGTTG ATAATGCAAA ATGGGCTTAC TTAGAAGGAA ATGTAAGTGG ATCAAATATA GGATATTATT TCCCAGAGGG AGCAAATATT AATTTAATAA AAGATGAAAG AGAAGGTAAT TGGATTAATG TAAACTCTTC TAAACCAGAA GCAGATAAGG TGGTTAAAGA TAATTACTTA ACTATGTATA TAGATCATGG AAAAGCTATA AAAGATCAAA AATATAGTTA TGTATTATTA CCAAATAAGA CTGAGGATAA GGTAAAAGAA TATTCTGAGA ATCCAAATGT TGAAATTATT CAAAATGATG ATGTAGCTCA TAGTGTTAAG CATAAAAAAT TAAATATTGA AGCAGCTAAC TTCTGGAAAG AGGGAAAAAA TACTGCTGGA AATATAACAT CAACAGGAAA ATCATCTATA ATAATAAAAG AAAATAAAGA TAATACCTTA AGCATAGCTG TGTCAGATCC AACTTTCTTA GAAAAAAATC TTTCTATAGA AATAAATAAA CCAGCAATGG AAGTAATAAA ATCAGATAAA AGAATATCAA ATATAAATTT AGAAAATGGA AAAATAAAAT TTGATGCAAA CACAGAAAAC CTTTCAGGGG CACCTTTAGA GCTTCTTGTA AAATTAGGCG ACAAAAATAA TGGAAACAAT GAAAATAATA ATGAAATTAA AAATGAAGCT CCTGTAATAG AAGGAGAAGA TGCTAATTTA TTTGTAGGAG ATAAGTGGGA TAAATCTCTT CACAAACTTA AGGCTAAAGA TAAGGAGGAT GGAGATTTAA CTAAAAATAT TAAGATTAAG GATAATCAAA TTCCTTTAAA TGATCAATTT GAAGTTACAA AGCCTGGGAC ATATCCAGTT ACTTTTGAAG TAAGTGATAA TAATGGGAAA AAAGCAGAGA AAAAGCTTAA TGTTTTAGTT AAAGAAAAGG AAGAGAACAA GCCAGAAAAT AAACCGGAAA ATCAAGAGAA TAAACCAGAG ATTAAACCAG AGGATCAAGA AAATCAATCA ACAAAACCAG AAAGTGAAGA AAATAAAGGG GAAAATCCAC AAGCAAATAA TAATACTGAA AAGCTACCTA ACACTGGAGG AGCAAGTAAT CTAAGCCTTG GAGCAATAGG TGTTCTTCTA GCTACTGTTG GAACAATGTT TACTAAGAAA AGAAAAAAAT AA
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Protein sequence | MKESRKKLNR LISTAIVSCM VMGASYENVL ALENKSQNNS EKVVKYDNEA EYIKNIRLRW KEDLVGNSSL DTSNATISKK IISYTNNTDK LVAKLNMDPN AQWLWEDLKD YKQNPARITS MFNNLVTMSM AYSLPNNKYY KNEDLKNKII YSLDWINKNA YNENIDQYGN WWDWMIGIPA RLNNIVVLMY DDLTEEQVKN YMNAIQKFLP SIEPGSKYHT GANLADVCMN KLLQGVNEND PEKIKEASED IVGVFDYVTS GDGFYKDGSY LQHGMVAYTG SYGNVLIEKI SNIMFLLEKT PWSIKSESKD NVYKWIFESF NPIIYKGYVM DMVRGRAISR YNANGYLQAS GIIEGMIKIG MISDGDKASE INALVKKWAT EAKSVLDFGA RFKSINVIGE FYGIMNNDNI KPLEEGDKHY ALNSMDKTVH KRENFALGIS RSSSRISKYE FMNKENLTPW FQGDGMTYLF NNDLNQFSGN FWATVDPYRM PGTTVDTRKR EPKEILPGLD PGASQQNEIY YELGKSNWSG GSKLGAYGVA GMEIDNKYDS LKAKKSWFMF DDEIVALGSG ITNPEDFETE TIVENRKIKS DGSNKFIVDG KERVSKLKEK DKVDNAKWAY LEGNVSGSNI GYYFPEGANI NLIKDEREGN WINVNSSKPE ADKVVKDNYL TMYIDHGKAI KDQKYSYVLL PNKTEDKVKE YSENPNVEII QNDDVAHSVK HKKLNIEAAN FWKEGKNTAG NITSTGKSSI IIKENKDNTL SIAVSDPTFL EKNLSIEINK PAMEVIKSDK RISNINLENG KIKFDANTEN LSGAPLELLV KLGDKNNGNN ENNNEIKNEA PVIEGEDANL FVGDKWDKSL HKLKAKDKED GDLTKNIKIK DNQIPLNDQF EVTKPGTYPV TFEVSDNNGK KAEKKLNVLV KEKEENKPEN KPENQENKPE IKPEDQENQS TKPESEENKG ENPQANNNTE KLPNTGGASN LSLGAIGVLL ATVGTMFTKK RKK
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