| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0373 |
|---|
| Symbol | |
|---|
| ID | 4201949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 450585 |
|---|
| End bp | 451403 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638081257 |
|---|
| Product | short chain dehydrogenase/reductase family oxidoreductase |
|---|
| Protein accession | YP_694830 |
|---|
| Protein GI | 110801037 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA TAATTGATGG AAGATTTAGT GACAAAGTAA TGATTATTAC AGGAGCAGCT
GGAGGAATAG GAAAGGCTGT GGCTTTAAGA GCAGCTAAAG AAGGAGCTAA ATTAGTTTTA
GCAGATAGAA AAGAAGAGAT GAGTAAAGAA ACTCTAAAAG AAATTAGAGA AATAACTTCT
AATGTTGAGT TTTTAATATG TGATTTAAGA GAAGGAGAAA ATTGTAAGAA AGTAATAGAT
ACTGCTATTA AAAAATTTGG TGGCTTAGAT ATTTTAATAA ATAATGCTGG AATTACAGGA
ACACCAGCAC CAGTACACGA GATGAGTGAA GAGATGTTTA GAAATGTTTT AGATTGCAAT
ATAATGATAG CATTTCATTG TTCTCATTAT GGAATTCAAG AGATGATAAA GCAAAATAAA
GGAGGAGCTA TTGTTAATGT TTCTTCTGTT GCAGGTTTAA CTGGATTTCC AGGACATTCT
GCTTATGTAA CATCTAAACA TGGATTAAAT GGACTTACTA GAAATATGGC ATTGGATTAT
GCTAGATATG GTATAAGAGT AAATGCAGTG AATCCAGGAA CTACAGATAC TCCAATGTAT
CATGAAGCTT TAGAATTTTT GAAAAATAAA AGGGAATCTG CTGAAAAGGC AGGAGTTAAA
ATTGAAGGGG GAATAGTATC AGGAAAAGTT ACTTCTCCTC AAAATAGAGT GGCAAGAGCA
GAAGAAGTTG CCGATGTCAT ATTATTCTTA TCATCACCAG AAGCAAGTAA TGTAACTGGA
ATATTTATGC CAGTAGATGG TGGTTTTACA GCATTTTAA
|
|---|
| Protein sequence | MSKIIDGRFS DKVMIITGAA GGIGKAVALR AAKEGAKLVL ADRKEEMSKE TLKEIREITS
NVEFLICDLR EGENCKKVID TAIKKFGGLD ILINNAGITG TPAPVHEMSE EMFRNVLDCN
IMIAFHCSHY GIQEMIKQNK GGAIVNVSSV AGLTGFPGHS AYVTSKHGLN GLTRNMALDY
ARYGIRVNAV NPGTTDTPMY HEALEFLKNK RESAEKAGVK IEGGIVSGKV TSPQNRVARA
EEVADVILFL SSPEASNVTG IFMPVDGGFT AF
|
|---|
| |