Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_0124 |
Symbol | |
ID | 4201202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 149168 |
End bp | 150046 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 27% |
IMG OID | 638081005 |
Product | sortase family protein |
Protein accession | YP_694588 |
Protein GI | 110799718 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3764] Sortase (surface protein transpeptidase) |
TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.145453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGAGTA AGAGAAAATT AAAAAACAAA ATTTTTGATT ATATATTTTT ATTCATTGCA GTTATAGGAA TTGCGTTAAT GCTTTACCCT TTTTATTCAG ATTATAAACT TGGAAAAAGT CAAAAAATGC AAATCGAAAA GTATGAATCA AAAGTAAGTC AAATGTCTGA TGAGGAAAAG AAGAAAATTT TAAAAACTTA TGAAGAACAA AATGGAAATA ATACTGAAGT TACTTCAGAA GATCCATTTA ATAAATCTGA TAGTGTAAGT AGTATTGACT TAGTTAAAGT TCAATTACCA GATGTAATTG CTATTCTTGA AATACCTAAG ATTAATTTAA AAGTACAAGT ATACCCTACT ACTAACGAAA TGGTATTAAG AGAAGGAATT GGTGTTTTAG ATGGTACTTC ATTACCTACT GGAGGAAATG GAAATCATTC TGTTTTGACT GGACATAGTG GATTGTCACT AGAAAATATG TTTACAAATC TTCATGAGTT AGAGTTAGGA GATCATTTCT ATATTAATAT TTTGGGAGAA GTACATGATT ATGAAGTTGA TAAAATACAA ACAGTTCTTC CAGATGATAC TTCTCATTTT GACAAAGTAC CAGATAAGGA TTATATTACG CTGGTTACTT GTACACCTTT AGGGGTTAAT AGTCATAGGT TATTAGTACG TGGGCATAGA GTTGATGATA GTCTAAGTAA TAATAAAAAT ATTAATTCAA GTAAAATTCC TAACTTAGAT AAAAAGGATC ATTTTAGATT TGGATCAGTA AAAACAATTA TAGTAACTAC AATAATTGTT TTACTATTTC TATTTGTTTT TTTGTTCATT TTAAGAAGAA AAAAGGAAAA AAATAATATT GATAAGTAA
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Protein sequence | MVSKRKLKNK IFDYIFLFIA VIGIALMLYP FYSDYKLGKS QKMQIEKYES KVSQMSDEEK KKILKTYEEQ NGNNTEVTSE DPFNKSDSVS SIDLVKVQLP DVIAILEIPK INLKVQVYPT TNEMVLREGI GVLDGTSLPT GGNGNHSVLT GHSGLSLENM FTNLHELELG DHFYINILGE VHDYEVDKIQ TVLPDDTSHF DKVPDKDYIT LVTCTPLGVN SHRLLVRGHR VDDSLSNNKN INSSKIPNLD KKDHFRFGSV KTIIVTTIIV LLFLFVFLFI LRRKKEKNNI DK
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