Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_0087 |
Symbol | |
ID | 4203562 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 103419 |
End bp | 105008 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 638080968 |
Product | putative symporter YidK |
Protein accession | YP_694551 |
Protein GI | 110800165 |
COG category | [R] General function prediction only |
COG ID | [COG4146] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCATAT TTTTGAGTTT TGCAATATTC TTAGTAGCTG TATTCGCTAT TGCTTGGTAT AAAGCTAAAG GCACTGATAA TACAGAAACA GCAACAGGAT ATTTCTTAGC AGGAAGAGGA TTAAGCGGTC CTGTAATCGC TGCAACAATG ATACTTACAA ATCTTTCAAC TGAACAGATC ATAGGTCTTA ATGGTCAAAG TTATGCTACC AATATGGGAC CAATGGCATG GGAAGTTACA TCATGCGTAG CACTTATAAC ACTAGCTCTT ATATTCTTAC CAAGATATTT AAAAGGTGGA ATCACAACAA TCCCAGATTA TTTAGAAGAG AGATTTGATA GCACAACTAA AAGAATAGTT TCAATTTTAT TCTTAGTTAG TTATGTTGTA ACTTACATAC CTACAGTTTT ATATTCAGGT GGACTAGTTT TAAATCAGAT TTTTGGTATA TCAGATTTAT TAGGAATAAG TACATTCCAA GCTGTAGCAT TAACTGGATT TTTATTAGGG GTAGTAGGTG CTATATATAC AGTTCTTGGA GGTATGAAAC TAGCAGCATT CTCTGATACT GTAAATGGAA TTGGCTTATT AATCGGAGGT CTTTTAGTAC CTATATTAGG AATATTATTA CTTGGAAATG GAGATTTTGT TGGAGGATTT GAAATAATAA TTGCAACTCC AGAAAAGCTT AATGCTATTA ACCCAGCAAA TGCACAATCA CCATTAATTC CATGGCCTGT ATTATTCACT GGATTATTAT TTAATAACTT ATTCTATTGG TGTACAAACC AATCAATAGT ACAAAAAGCA TTAGGAGCTA GTAGTTTAAA AGAAGCTCAA AAAGGTGCTA TACTTGCAGG ATTAATTAAG GTTTTAACTC CAGCAATACT TGTATTCCCT GGAATCATAG CTTTTGCTAA ATATGGAGAT GCATTACCAA ATGCGGATAT GGCATATCCA ACATTATTGC TTGATGTATT ACCAAAACCT TTATTAGGAA TATTTGCAGC AATTTTATTT GGAGCTGCCA TGAGTTCATT AAATGGTGCT ATGAACAGTT CATCAACACT ATTTACTTTA GATTTATACA AACCTATCAT AAATCCAGAG GCTTCAGATA AACAACTTGT AAAAGTAGGA CAAAAATTTA TTATAGTGGT ATCAGTTATA TCAGTTATAG TTGCTCCATT TATCCTATAT GCTCCATCTG GATTATATAA CTTCTTACAA GAGTGTAATG GATACTTTAA CGTTCCGATA TTAGCGTGTG TAATAGTTGG ATTCTTTACA AAGAGAGTTC CAAGTCTTGC TGCTAAAGCA GTATTCGTAG TGCACATTGT TTTGTATACG TTATCAAAAT TCTTCTTATC AGATATACAC TTCTTATACG TACTAGGTGT GTTACTACCA ATAGGTGTAA TTGTAATGCT TATAATAGGT AAGATAAAAC CAAGAGAAAC AGATTTTGTT CAAGCTGATA AGGCATTAAT AGATATGACT CCTTGGAAAT ATGCAAAACC AGCATCATTA GCTGTAGTTC TTGTTATGGC ATTTATATAT CTATTATTCT CACCTATAGG ATTAGCTTAA
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Protein sequence | MFIFLSFAIF LVAVFAIAWY KAKGTDNTET ATGYFLAGRG LSGPVIAATM ILTNLSTEQI IGLNGQSYAT NMGPMAWEVT SCVALITLAL IFLPRYLKGG ITTIPDYLEE RFDSTTKRIV SILFLVSYVV TYIPTVLYSG GLVLNQIFGI SDLLGISTFQ AVALTGFLLG VVGAIYTVLG GMKLAAFSDT VNGIGLLIGG LLVPILGILL LGNGDFVGGF EIIIATPEKL NAINPANAQS PLIPWPVLFT GLLFNNLFYW CTNQSIVQKA LGASSLKEAQ KGAILAGLIK VLTPAILVFP GIIAFAKYGD ALPNADMAYP TLLLDVLPKP LLGIFAAILF GAAMSSLNGA MNSSSTLFTL DLYKPIINPE ASDKQLVKVG QKFIIVVSVI SVIVAPFILY APSGLYNFLQ ECNGYFNVPI LACVIVGFFT KRVPSLAAKA VFVVHIVLYT LSKFFLSDIH FLYVLGVLLP IGVIVMLIIG KIKPRETDFV QADKALIDMT PWKYAKPASL AVVLVMAFIY LLFSPIGLA
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