| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0071 |
|---|
| Symbol | nagE |
|---|
| ID | 4201497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 79744 |
|---|
| End bp | 81189 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638080949 |
|---|
| Product | PTS system, N-acetylglucosamine-specific IIBC component |
|---|
| Protein accession | YP_694536 |
|---|
| Protein GI | 110799623 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component
[TIGR01998] PTS system, N-acetylglucosamine-specific IIBC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA AAGGTTCAAA AGTTTTAGGC TTTCTTCAAA GAATAGGTAA ATCTTTAATG
GTTCCTATAG CAGTAATGCC AGCTTTAGGA TTATTATTAA GACTTGGAGA TAAAGACTTA
TTAAATATCC CTTGGATCAG CGCTGCTGGT GGAGCTGCCT TTGGAGATAA TATGGCAATG
CTTTTTGCTG TAGGTATAGG ATTTGGACTT TCAGATGAAA ATAATGGAGT TGGAGGATTA
GCAGGTCTTT TAGGATTTTT AGTTATGAAA AATGTTGCAA CTTCATTTGA TCCAAGTATA
AATATGGGAG CTTTTGGTGG AGTTGTAGCC GGAGTTGTTG GAGGACTTTT ATATAATAAA
TTTAAAGATA TTAAAGTTCC TCAATTTTTA GGATTCTTTG GTGGAAAAAG ATTTGTTCCA
ATAATAACAT CAGCGGTATG TCTTATTTTA GGGGTATTCT TTGGATATAC TTGGCCAACA
TTCCAAGCTG GATTAGACGG ATTTGCTAAT ATAATGGTAG CGGCAGGTGC TATTGGGGCT
GGAATATATG GAATATTAAA TAGATTATTA ATACCAATTG GATTACACCA TGTAATGAAC
ACAGTAATTT GGTTCCAATT AGGAAGCTTT ACAGATCCAG TTTCAGGTCA AATTGCAACT
GGAGATATTG CAAGATTTTT AGCTGGAGAT CCAACAGCTG GGGTTTACAC AGCAGGCTTT
TATCCAATAA TGATGTTTGG TTTACCAGCT GCATGTTTAG CAATGTATGT TTGTGCTAAG
AAGAAAAACA AGGCAGTGGT TGGGGGAATG TTCTTATCAT TAGCATTAAC AGCTATAATA
ACAGGTATTA CAGAACCAAT AGAATTTGCT TTTATGTTCT TATCACCAAT ACTTTATGTT
ATACATGCAA TATTAACAGG TATATCATTA GCAGTGGCAT ATGCTCTTAA TGTACATCTA
GCATTTAGTT TCTCAGGTGG ATTAATTGAC TATATTTTAT ACTTTGGAAA AGGTCAAAAT
CAATTAATAA TATTATTAAT GGGACTTGTT GCATTTGTAG TTTATTATTT CTTATTTATG
TTCTTTATTA AGAAGTTTAA TCTTAAAACA CCTGGTAGAG AAGATGATTT TGATGATGAA
AATGAAGATA CAGAAACTAA TTCAAAAACA GTATCAAAAT CAGAAGACAA TCCATCTAAG
GGTGGTACTT TAGCTGAAAA GGCAGAAGTT GTTTTAGAAG CTCTTGGAGG AAAAGAAAAT
ATAGAAGTTC TAGACAACTG TATAACAAGA TTAAGATTAA CTTTAAAAGA TGCTTCTAAA
ATAGATGAAG TTACTTTAAA AAAGGCTGGA GCTAGCGGAA TAATGAAATT AGATGGAAAG
AATGTTCAAG TAATTATGGG AACTTTAGCA GATCCTTTAG CTAGCCAAAT GAAAAAATTA
CTTTAA
|
|---|
| Protein sequence | MSKKGSKVLG FLQRIGKSLM VPIAVMPALG LLLRLGDKDL LNIPWISAAG GAAFGDNMAM
LFAVGIGFGL SDENNGVGGL AGLLGFLVMK NVATSFDPSI NMGAFGGVVA GVVGGLLYNK
FKDIKVPQFL GFFGGKRFVP IITSAVCLIL GVFFGYTWPT FQAGLDGFAN IMVAAGAIGA
GIYGILNRLL IPIGLHHVMN TVIWFQLGSF TDPVSGQIAT GDIARFLAGD PTAGVYTAGF
YPIMMFGLPA ACLAMYVCAK KKNKAVVGGM FLSLALTAII TGITEPIEFA FMFLSPILYV
IHAILTGISL AVAYALNVHL AFSFSGGLID YILYFGKGQN QLIILLMGLV AFVVYYFLFM
FFIKKFNLKT PGREDDFDDE NEDTETNSKT VSKSEDNPSK GGTLAEKAEV VLEALGGKEN
IEVLDNCITR LRLTLKDASK IDEVTLKKAG ASGIMKLDGK NVQVIMGTLA DPLASQMKKL
L
|
|---|
| |