| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNL05830 |
|---|
| Symbol | |
|---|
| ID | 3254880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006681 |
|---|
| Strand | + |
|---|
| Start bp | 617985 |
|---|
| End bp | 621711 |
|---|
| Gene Length | 3727 bp |
|---|
| Protein Length | 927 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | 638254059 |
|---|
| Product | conserved hypothetical protein |
|---|
| Protein accession | XP_568116 |
|---|
| Protein GI | 58261412 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5078] Ubiquitin-protein ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00168148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GGCTTTCTTC ATACTACTTT ACCTTCCTTT CCCGTACCCT CGCCCGTTCA GGGAGGTTTG
TCAATAAAGT CCATTGTTTG GCAGCGGCTT GCAGAGATAC GCAACACAAT GGGAGATCCG
GCGTTATCAC AGCTGATCGA TATGGGCATT CCGGTCGGAA GAGCAAGAGC TGCTCTGAAG
AGGTCTAAGG GTGACGCCAT GTCTGCTGCT GTAAGTCACG GTGGTCATTC ACATGTCAAT
TCCGTACTTT TAGAACATTC TGAAATTCAT CTTGTAGGAA CGAGTATTTG CTGGAGAATT
TGATGACATA CCATCGGATG ATGAAGGGGA AGATGGAACG GAAGGAAGCA GCTCCGTCCA
AGTTGTCCGT ATCTATCTCA TATAAGCGCC AATAGCTGAA GCTTACTGCC TTAATTGTAG
AAGGCGGATC CCGTGGTGAT CGATAACAAT GAAGACGATG CCATGGACGA GGACGAGATG
GGACATGAGG ACGAGGAAGA TGATTATGAC GATATGAACG ATGGTAATTT TGACTATGAT
GGTTAGTAAT TGATAACAAA GGGCTCCTCA CAAGCTTCAT CTGACAAATC AATACTTAGA
GGATATGTCT GATGGCGAAC AAATGGCGTC AGATCCTTAC GCAGGAATAT TCTTCTCAAA
GAACCGCGTC GAGGAGATCA TTGAACCGAT TGAGACAGAA GAAACCATGA CCATATCAAT
ACCAGGAGGA AGCACGGTCG AGGTGAAGAT CTTAGGTAGA GGAGAATGGA TGAGCGGATG
TCCTGAAGGA GGTGAACAGA GCTTCCTTTT CCAGCTCTAT AATACATTGG AAGAAGGCGG
AATGCCTTGC TCGGCTGGAT GTGGACATTC ATTTACCCGC AAGAAACAAG ACTTTTTCTG
TCTCTTCGTA AATTTCAATC ATATTTCTTT AAATCCGCTC AAGCTGATGA TCGACATAGC
CGAAATTCCC GCAATACACC ACATACCTCA ACAGCATCAT CCGCCCTAAT TGCCCCCAAT
GTCACCAAAT CACTTGTCTC GCATGTGGTG AGCGAGTCGA CCGTCCTTCC GCTTTACACA
GCCAACATTC CAAGGATAAA GCCCCAATGA CTTCGGCTCC TAGCATTCCT TCCGAAACAA
CCCAGGAAGC ACTCTTACAC TGTCCAAATC TTCAAGGTGT CATCCTTGGT GTGGGTCTGC
ACATGATTGA AAAGACATTT TCTCAGGGAA GAGATCATAA TTCATGCGCA GAGAAGAGCG
GAAGGACACC GCCCTCAAAG AAGAGAAAGA CTGATGATAA CCCACCTTTC TTGAAGGGAA
AAGGAGCTGT AAAAGGGACT GGCTATGCAG GAAATGTACA AGAAGATGTA AGCGAAAGAT
CCCTTCGTTT CAAGATCTCT TCGTTTCGAT GGTTGCTTAT TGTAATTGCA GAGGACGGGC
CAGGTTGCAG CTGAAAAAGC CCAGAAAAAG GCGGACCAAA AAGTCGCCAC CATTCTTCAA
CAAGTCCAGC ATTTCCTTCC CAACCCTCAT CGCGCTGGTG GGCCAGCAAC ATCCGACTAT
CTTGTCCACC CTACTGCCTT AGCGCATTTG AGAAGACGGA GTACATTTAT GAATGATTTG
CTGAGAAATG ATAGTTTGTT CGATATGAGC CAACGGGGAG ATATTTATCG GGCGTTGTTC
GATTGGCTCG AGGTGAGTCT CATCTCATGA CATGAATGTA TTGGTACTGG GAAAAGGGAA
ACGGTCCTGA CTAAAATAGA TTGTTTCAAA CAATGAATCC CTCGCTTCAA TGCTTGGCAT
GCCGCAAATG CGTCCCGCCA AATCTGTCCC TTCACCTACC GTCTCCAACT CCCTCATCGT
TACCTACGAA GGCGCTCCCT CCCCACGTGA ACTTCTCGAG AATATCGTCC TCCAAGCCAA
AGCCGCTTTA AAGGGCCTTG AAGGTATTCA ACCAGCGCAA ATTGAAGGAA TAGCGTTGAC
CGAAGAGGAA CTAAGAACAA ATATAAAGGA AATGGAGAAG AAGGAGGCTG AAAGGATTGA
AAAAGAGTCG CTAGACGAAA ATAGCGTATT GAAGGCGTTC TGGTGAGTCT CTGTGTATTT
GTAGATGCTG CCATGCCAGC CTTACTGAAC AAAGCAGTTT GAGGATCATC AAGAGTGCAG
AAATTATCGA CAAGCGACTG GTTGAGACGA AGGGTAAAGC GTTTGTGCAG AGGATGAAAG
AGCAACTGCC GCGAATAGAC GAAAGTGGAG TTCAAATTGA GGAGAACCCT GTGGAAAATG
GGACCGACGA AGAAATCATT AAGATTTGTA CGCCCTCTCC TCTGCATTCA CAATTCATAC
GGCGATGAGA AGCGCTAACA GCTAATAGAT GAGGAATGGG CTACCAGGGC TAGGTTCCAA
TACGTTGATC TTCGGGCGGG AAGCGATATT ACGGGTGCGC CGAGCTACAA GCATGCGTAT
AGTACTCTTA TCGCTGGTAT CGAGCTCAAT GTACGTCTCA GCATGTTTTC GCCATTCTGT
ATATCTCTAA CCTTGGTCAC CGCAAAAATA GAACGCCCCA AAACGATCAC TCGCAATTGC
TAAAGAGTTG GCAATACTTA CTACCAGTCT TCCTGTAGCG TGGCACTCGT CCGTCTTTCT
GCGGGTAGAC GAAGCCCGTG TAGATGTCCT CAAAGCTATG ATCATAGGCC CAGAAGGGAC
ACCATACGAG AACGGTTGTT TGCTTTTCGA CATCTTCTTA CCATTGGAGT ACAATCAACG
TTGTCCGCTC GTTAAGTATA TGACGACTAA TGGTGGGAAG TGGAGGTACA ACCCCAATCT
CTACGCCGAC GGAGTGAGTC AAACCTCTAA TCACTAAGGT TTGAGTGATA GAAGCTGATG
CAAGAATGAT TAGAAAGTAT GCTTGAGTCT GTTGGGGACG TGGCAAGGGC CAGGGTGGAT
TGCGGGCCAG TCGACCTTGT TGCAAGTGTT GATCTCGATC CAGAGTCTTA TTCTCTGCGA
GGAACCTTAT TTGAACGAGC CAGGTGAGTT CTTGATTTCT TGTTCGCTCA TTACATTCCC
TGATGATTGC TTAGGATGGG CAAATATGTC TGGGGTATGC ATCTATGTTA CAGATAGGAC
GCCTGAATAC GAAGAGCTGA CGAAAAATGC AGTCTGCACA AAGCAAAGCG TATAATGCCA
ATATCCGAAG GATGGTACTC GCTGACGCTA TGGCCAACAA CATCAAGAGC CCCCCGCACC
CATGTAAGCC GCATAATCGC TGTCAAAGGT GATGGATGAA ATGGCTAAAG CAGGATGACA
CTATAGTTGA GAACGAGATC AAGACCCATT TCCGGCTCAA AGCCAAGGCT ATTCGCCAGC
AGATCGAAAA GTACGTCCAT GTTTAGTGAG ACATATAACA TAATGCTTAT ATCGCGTATC
ACAGGTGGAG AGAAATGGAC GATAGTAAAG AAGTGGAAGC CGACTATTGG GGTGGAGCTC
ATACGTCCGC GGCCTCTGCG CTTTCCAATC GATCATTCGA GGCTGCCGCA AAGGAAGTCT
TACGACTGCT GGATGAATTG GAGGGGAAAG TGCAGCCTGT TCCAAAGGCC GAAGAGGAGG
CTAGGATTAA GTCCCCGAAG GAGGAAAAGA AGAAGTCCTC TTCTGTGATA TGGAACAAGA
TGATTGGTGG TAGCAAAAAG AAGTCGAAGA AAGATGTTTA ATATTGTATA GAATCTTCGG
CTTTTCA
|
|---|
| Protein sequence | MGDPALSQLI DMGIPVGRAR AALKRSKGDA MSAAERVFAG EFDDIPSDDE GEDGTEGSSS
VQVKADPVVI DNNEDDAMDE DEMGHEDEED DYDDMNDGNF DYDEDMSDGE QMASDPYAGI
FFSKNRVEEI IEPIETEETM TISIPGGSTV EVKILGRGEW MSGCPEGGEQ SFLFQLYNTL
EEGGMPCSAG CGHSFTRKKQ DFFCLFPKFP QYTTYLNSII RPNCPQCHQI TCLACGERVD
RPSALHSQHS KDKAPMTSAP SIPSETTQEA LLHCPNLQGV ILGVGLHMIE KTFSQGRDHN
SCAEKSGRTP PSKKRKTDDN PPFLKGKGAV KGTGYAGNVQ EDRTGQVAAE KAQKKADQKV
ATILQQVQHF LPNPHRAGGP ATSDYLVHPT ALAHLRRRST FMNDLLRNDS LFDMSQRGDI
YRALFDWLEI VSNNESLASM LGMPQMRPAK SVPSPTVSNS LIVTYEGAPS PRELLENIVL
QAKAALKGLE GIQPAQIEGI ALTEEELRTN IKEMEKKEAE RIEKESLDEN SVLKAFCLTE
QSSLRIIKSA EIIDKRLVET KGKAFVQRMK EQLPRIDESG VQIEENPVEN GTDEEIIKIY
EEWATRARFQ YVDLRAGSDI TGAPSYKHAY STLIAGIELN NAPKRSLAIA KELAILTTSL
PVAWHSSVFL RVDEARVDVL KAMIIGPEGT PYENGCLLFD IFLPLEYNQR CPLVKYMTTN
GGKWRYNPNL YADGKVCLSL LGTWQGPGWI AGQSTLLQVL ISIQSLILCE EPYLNEPGWA
NMSGSAQSKA YNANIRRMVL ADAMANNIKS PPHPFENEIK THFRLKAKAI RQQIEKWREM
DDSKEVEADY WGGAHTSAAS ALSNRSFEAA AKEVLRLLDE LEGKVQPVPK AEEEARIKSP
KEEKKKSSSV IWNKMIGGSK KKSKKDV
|
|---|
| |