| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNI04170 |
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| Symbol | |
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| ID | 3259559 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_006694 |
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| Strand | - |
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| Start bp | 1107459 |
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| End bp | 1110750 |
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| Gene Length | 3292 bp |
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| Protein Length | 803 aa |
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| Translation table | |
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| GC content | 45% |
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| IMG OID | 638258912 |
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| Product | DNA ligase, putative |
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| Protein accession | XP_572602 |
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| Protein GI | 58270892 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATTAAGGAAT ATGAGCGGTG CGTCTACAAC ACAAGCGGAG AAAATAAAGC TGACAACAGT
CAAGACATAG AGTATCCAGT TAAGTCTAAT ATCAGGAAAA AGAGGACGGT TATTCTTTCG
GATGACGAGG ACGAAGGACT TGGTCCATCT GTGATTAAGG AGCAAGTCTC GTCTCCCAAA
CATTCTCATC TATCTGATGA AGGTCAGTAC TCATAAATAG CATATGTAAG CTTCACTAAT
TTGATTTGTA TCATCAGAGA CGGAGCCTCC CCGGAAAGTT GCAAAAACGT CATCCAAAGT
CGCGCCTATC TTTGCTCCCA AAGAGAAGAA AGAAAAACCA TCTCCCAAGA CTTCATCAGC
TTTATCTAAA GCACCTGCCA AGAAGATAGA AGTAAAGAGC AAGGGTGAAA AACCACTTGC
ATCAATATTC ACAAAAGCCA CACGGAAGCC TGAGCCTAAG GATGACGACG AAATGTCGGA
CGAGGTGAAA CAAAAGGGGA AAGATGAGGA AGAGGAGGAT GAGATATATG ATGAAGTTGA
GGATAAGCAG GAGGGAGAGG CCGCTGTCAA ACTGTCAGTT TGGACGCTTT CTACTCCAAA
GACTTAGCTA ATATGGTTTA GGGCCTCAAT CTTTACCAAG AATCAAAAGT CTGTCCCTGT
GGCTGACAAG GGCTGGAAAG ACGGCGAAGC GTCAGTTCGT TCATTCATTG TTTGAAGCTC
TACTGACTGA TCGACCTTAG TGTCCCATAT CCCGCTCTTG TATCAACGTT CGAAAAAATT
GAGGCTACGA CTAAGCGATT AGAGATCCTC GAATTCTTAA CCCAGTTTTT ACTCGTTGTT
GCCAAGAGAG ATACAGCCAC AGACGCCAAA GGGTCTATGC TCCTTAAAGT GGTCTATCTT
TGTATCAACA GGGTAAGTAT CTCGATTTTC ACGTCATAAC CAATCACTGG ATTTGACGAT
CCGATTTTAG CTATGCCCCG ACTATATGGG TATCGAACTT GGTATTGGAG AATCATTATT
GATCAAGGCC ATTGCGGAGA GCACAGGGCG GGCTATGCCC AAGATCAAAG AAGATTTAAA
GAAGGAAGGA GACCTCGGAA AGGTTGCCAT GGTACGTGTG ACATGTTAGC TATGTCGGTT
ATGTAGCGTC TGACTTTGAG GTTAGAACTC TAGAAACACT CAATCAACCA TGTTCAAACC
CAAACCTTTG ACAGTACCAT ATGTTTTCCA ATGTCTCACT GATATCGCAA AGGCTAGCGG
GAACGCGGTA TGTATTTGTG TTTACTTGTC TCTATCTCCA CAGCTGATCA AATCAATACA
GTCACAAGCA AAGAAAGTAG GCATTATTAA GAAACTCCTT GCTGCTTGCC AAGGCACCGA
GGCCAAATTT ATCATCCGAT CCCTCGAAGG AAAATTACGA ATCGGTCTTG CCGACAAGAC
AGTCGTGGTT GCCTTGGCTC ACGCTATCGT CCTGAAGACA ATTGGTGGGC CGTTCCCTCC
ATCTCCTTCT CCAAAATTAA TCTGTATACG TTAGGTGACA AAAAACCGCC ACCTGAAAAA
CTTGCTATCA TGCTGGAACA GGGCGCTGAG ACTGTTAAAG CTGTCTATAG GTGAGAAAAT
TCTTGCCAAA TGGTCATTAC GGGCTTGCTA ACGCACCTTG ACCGCAAGTG AGCTTCCATC
GTACGACCTG GTAATCCCTG CTCTTCTCCA AGGAGGCGTA GAAGGTTTGA GAGAACGCTG
TAAACTTACT CCAGGTGAGT TTCCCCACAA AATATCCTAT CCCACATTTG CTAATCATCG
CTACTTACAC AGGCGTTCCT CTCAAACCTA TGCTTGCTAA GCCGACGAAA GCCATCACAG
AGGTCCTTGA CCGTTTCGAA GGCAAGGAAT TCACTTGCGA GTACAAGTAC GATGGAGAAC
GTGCCCAGGT CCACCTGTTG GAAGATGGTA CCATTTCTGT GTTTAGTAGA AATTCGGAAA
ACATGAGTGC CAAGTATCCC GATCTGGTGG ATCAAATACC GAGGGTGAGG ATATGGATAT
ATTCATAAAA ACATTCTTCG CCTCAGATAC TGACTGTAAT GGGTTAGTCT ATGAAACCTA
CTGCCAAGAC GTTTGTCATC GATGCCGAAG CCGTTGCTTA TGATTTGGAA ACCAAGAAGA
TTCTTCCTTT CCAAGACCTG AGTAGGCGAA AGCGAAAGGA CGTCAAGGCC GAGGACATCA
CAGTGCGGGT GCATATCTTT GCGTTCGATT TGCTCTATCT CAATGGAGAG GTTAGTGGGT
CGCTATTCTG TGTGACTTTT AGCTGAAAGA ATCACCATTT TCCAGAGTCT TCTCGCTAAA
GAGCTTAAAG AAAGACGACA GCTCCTACAA GAGCATTTCC AACCTGTGGA ATCGGAGTTT
GCGTTTGCCA AGTCATCAGA TGGAAGCACG ACAGAAGAGA TCCAGGCATT GCTCGAAGAA
AGTGTGAAGG ATGGGTGTGA GGGTTTGATG GTGAAAATGC TCACTAGCGA GTCATCAACA
TATGAGCCCA GTAGAAGAAG TATGAATTGG CTCAAGGTAG GTATCGCAGT TTTCCATCAC
TCTGATCACT AACATTGACC ATATGCAGCT CAAGAAAGAC TACCTTTCAG GTGTTGGAGA
CTCTCTCGAT CTTGTTGTCG TTGGAGCATA TCATGGCAAA GGCAAACGTA CAGCAGTCTA
TGGCGCTTTC CTCCTCGCGT GCTATGATCC CGATTCGGAA CATTATCAGA CTATCTGCAA
GATTGGTACC GGTTTCTCCG AGGAAATCCT CACACAATTC TACGAGTTAC TTAAACCTTT
AGAACTGGAA GTCGTGAGAG GAGATATAGA GGTTGGAGGA GCCAAACCGG ATGTATGGTT
TGAGCCCAGA GTGGTCTGGG AGGTCTTAAC AGCCGATTTG AGTTTAAGTC CGATTTACGC
GGCGGCACAT GGTGTAGTGA GTATTATCAT CCATTGTGCC GTGCCAAAAG GACTAACAAG
GCGCGTAGAT CGATTCTCGA GGAATCTCGC TCCGTTTCCC TCGGTTTATC AGGATTAGAG
ACGACAAGTC TGCTGACGAA GCCACAACGG CTGAGCAGGT CAGCGAGTTC TATCAACGTC
AGATTTCGGC AGGTGGCAAG AAAGGGGCGG GGGCGGACGT GGATGACTTC TGGTAATGAA
GTATATTTGC TTTGGGTAAG GGTAATTGGA GACGTCAACC TGGATAGTTT GTTGTTTTCT
TGCACTTGAC CAATTTCATG ATTATGTACA ATGCATACGA TCGCGTATCT TG
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| Protein sequence | MSDIEYPVKS NIRKKRTVIL SDDEDEGLGP SVIKEQVSSP KHSHLSDEET EPPRKVAKTS
SKVAPIFAPK EKKEKPSPKT SSALSKAPAK KIEVKSKGEK PLASIFTKAT RKPEPKDDDE
MSDEVKQKGK DEEEEDEIYD EVEDKQEGEA AVKLASIFTK NQKSVPVADK GWKDGEAVPY
PALVSTFEKI EATTKRLEIL EFLTQFLLVV AKRDTATDAK GSMLLKVVYL CINRLCPDYM
GIELGIGESL LIKAIAESTG RAMPKIKEDL KKEGDLGKVA MNSRNTQSTM FKPKPLTVPY
VFQCLTDIAK ASGNASQAKK VGIIKKLLAA CQGTEAKFII RSLEGKLRIG LADKTVVVAL
AHAIVLKTIG DKKPPPEKLA IMLEQGAETV KAVYSELPSY DLVIPALLQG GVEGLRERCK
LTPGVPLKPM LAKPTKAITE VLDRFEGKEF TCEYKYDGER AQVHLLEDGT ISVFSRNSEN
MSAKYPDLVD QIPRSMKPTA KTFVIDAEAV AYDLETKKIL PFQDLSRRKR KDVKAEDITV
RVHIFAFDLL YLNGESLLAK ELKERRQLLQ EHFQPVESEF AFAKSSDGST TEEIQALLEE
SVKDGCEGLM VKMLTSESST YEPSRRSMNW LKLKKDYLSG VGDSLDLVVV GAYHGKGKRT
AVYGAFLLAC YDPDSEHYQT ICKIGTGFSE EILTQFYELL KPLELEVVRG DIEVGGAKPD
VWFEPRVVWE VLTADLSLSP IYAAAHGVID SRGISLRFPR FIRIRDDKSA DEATTAEQVS
EFYQRQISAG GKKGAGADVD DFW
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