| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CNI01130 |
|---|
| Symbol | |
|---|
| ID | 3259645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cryptococcus neoformans var. neoformans JEC21 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_006694 |
|---|
| Strand | + |
|---|
| Start bp | 278522 |
|---|
| End bp | 282287 |
|---|
| Gene Length | 3766 bp |
|---|
| Protein Length | 1154 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | 638258600 |
|---|
| Product | small nuclear ribonucleoprotein, putative |
|---|
| Protein accession | XP_572829 |
|---|
| Protein GI | 58271346 |
|---|
| COG category | [A] RNA processing and modification |
|---|
| COG ID | [COG5181] U2 snRNP spliceosome subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.500955 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTCGAGGAAA CATTCTGTCC ACCAGCTCAC CACGAACCAT GTCTGACGAA GAGTACCCAC
AGCTCCAGTC GTACACGGCT CCCCAGGACA TTCTCGATGA GCACGCCGAG CTCGCAGACG
AGGACGAGAC CCCGGATGCC TTCCAGGATA AGGCCAAGTC AAAGCAAGTA GCTGCTAGGC
AAAGCGACTA CCACTTGCGT AGGTTCAACA GGACAGATGG CCAGGGTGAA GGCGAGGATG
AAAGCTATGA AGAACGTATG AGGAGAATCA ATTTGGAGAA GGAGGAGGAG AAGGTTCGAA
GATACAAGGA AAAGATGGAG AAGGAGGAAA AGGAGAGAGG AGAAATGCGA GTGGACGACA
AGACCCCGCC GAGAGAGCTC ACAGGTGGTG ATACCCCACC GCGTAAGGCT CTTATTGGGG
ACGAGACGCC CCCTAGAGCT CAGGCTGGTG ATGTTACTCC TCCCCGCAAG AAGCGAAGAT
GGGATACTGA GCCCGAAGTT AAGCAAGAAG TCAAGGAAGA GGTCAAGGAG GAGGTCAAGG
AAGAAGAGCC CAAAAAACGT CGCTCTCGAT GGGATCAGAC TCCAGCTGAG GCACCACCCG
AGAAAAAGCG TTCCCGATGG GATCAAACTC CTGCGCAGAC TGCGTCCTCT AGTGTTCTCG
CTGCTCCTAC CAACCTCGCC AAACCTTCCG GCATCGTCCT GGTCGAAGAC AAGCGATACC
GGCGCATGAC TGACGAAGAG CTCGACTCAT TGCTTCCTGG ATCTGAAGAA GGTTACGTTG
TGGTACCCGT ACCAGACGAC TATCACCCCG CCCCTTCAGT TCGCAAGATG GTTCCCCAGC
AGGCTGAAGC TGGATTTATG ATGCAGGATG AAACAGATGC TGCACGAGCG CGAGCAGCTG
CTGGTGGTTT ACAGGGTACA ACTGAGCAAA CAGAGATTGA TGGAATTGGG ACTCTCCAAT
TCCTCAAGCC TGAAGATACC CAGTACTTTG CCAAGGTTCT CGGCGAAGGC GGTGGTGAAG
AAAACGACGC AGAATACACT GTTGAAGAGC TCAAAGAACG CAAAATCATG CGACTTTTGC
TCAAAATCAA GAACGGTACC CCTCCCGTCC GTAAAACCGC TTTGCGTCAA ATCACCGATC
GTGCGCGAGA GTTCGGTGCG GGTCCATTAT TCGACAAAAT CCTTCCTCTT CTTATGGAGC
GTACGCTCGA AGACCAAGAA CGACATTTGC TTGTCAAGGT CATCGACCGT GTTCTCTATA
AGCTTGATGA CCTTGTTCGT CCATATGTCC ACAAGATCCT TGTCGTCATC GAGCCTCTTC
TTATCGATGA GGATTACTAC GCTCGAGTCG AAGGTCGGGA AATCATTTCC AACCTCGCCA
AAGCAGCCGG TCTTGCCCAC ATGATCTCCA CCATGCGTCC CGATATCGAC CACGTTGATG
AGTACGTCCG TAACACCACT GCCAGAGCCT TTTCGGTTGT AGCCTCCGCC CTTGGCATCC
CTGCTCTTCT TCCTTTCCTT CGTGCTGTCT GTCGATCAAA AAAGTCTTGG CAGGCGAGAC
ATACCGGTAT CCGTATTATC CAACAAATTG CCATTATGTC AGGCTGCGCA GTCCTTCCCC
ATCTTCGTAA CCTCGTCGAC GCCATTGCCG ATGGTTTGAA AGATGAGCAA CAAAAGGTTC
GAACTATGAC CGCTCTCGCC CTTGCTGGTC TTGCCGAAGC TGCCGCGCCT TACGGTATCG
AGTCATTCGA CAACGTTCTC AAACCTTTGT GGCTCGGTAT CAGACAGCAC CGAGGTAAGA
CTCTCGCCGC CTTCCTCAAA GCCATCGGTT ACATTATCCC TCTTATGGAC CCCGAGTACG
CCGGATACTA TGTGCGAGAG TGTATGCCTA TTTTGATCCG AGAATTCCAG ACTTCTGATG
AAGAAATGAG AAGGATTGTC TTGCAAGTCA TCAAGCAGTG TGCCTCCACC GAGGGTGTTA
CTCCTTCATA CATCAAAGAA GAGGTTCTCC CCGAGTTCTT CAAGGCTTTC TGGGTCAGGC
GTATGGCGTT AGACAAAAGG AATTACAAGC AGCTTGTAGA GACCACTGTC GAGCTGGCCA
ACAAGGCTGG TGTCGCAGAG ATCGTCGGTA GGACAGTCAA TGATTTGAAG GACGAAAGTG
AACCTTTCCG AAAGATGGTT ATGGAGACCA TCACCAAGGT GGTTTCCAAC ATTGGTGCTG
CCGATGTCGA CGAACGTCTA GAAGTCTTGT TAATTGACGG TATTATCTAT TCCTTCCAGG
AGCAGACTTT TGAAGACACT GTCATGCTTG ACGGTTTCGC CACTGTTGTC GCCTCTCTCG
GGCCTCGTGT CAAGCCTTAC CTTCCACAAA TCGTTTCCAT GATCCTTTGG AGATTGACCA
ACAAGTCGGC CAAGGTGCGA ATGTTGGCAG CTGACTTGAC CACCAAGTTG GCACCGATTA
TCAAGAGCTG TAAGGAGGAT GTACTGTTGA GCAAGTTGGG TGTTGTTATC TTCGAGCAGT
TGGGTGAAGA GTATCCGGAC GCTTTGGGAA GGTCAGTCTA TTTACCAAAC ATGAAATGAG
CATAAGCTGA CTCTTTACTA GTCTTATCGC CGCGGAGGGG GCTATCGCGA ACGTTGTTGG
TATGACAGAG ATGAACCCGC CCGTCAAGGA TCTTCGTGAG TGACATTGTT GATGTGACGA
ATGAGCCAAT TGTTAATACA TTTTGGCAGT CCCCAGAATG ACCCCCATTC TTCGAAACCG
ACACGAAAAG GTTCAAGAAG CGACCATCAA CTTGATTGGT CGTATTGCCG ATCGAGGTGC
CGAATATGTC CCTGCTAAGG AATGGATGCG AATCTGTTTC GAGCTTCTTG ACCTGCTCAA
GGCCCATAAG CGAGCGATTC GACGAGCGGC TGTCAACTCT TTCGGTTATA TCGCCAAGGC
TATTGGTCCT CAGGATGTGT TGAGTGTCCT CTTGACAAAT TTGAAGGTGC AGGAGCGACA
GAGTAGGGTG TGTAGTACCG TCGCTATCGG TAAGCATCGA TTTTCAAATG ACTCTGCACA
GATACTGATA GCAACTAGCC ATTGTCGCCG AAACCTGTGG TCCTTTCACT TGTATCCCCG
CTATCCTTAA TGAATATCGA ACTCCTGAAC TTAACGTTCG AAACGGTTGT CTCAAGGCTC
TTGCTTTCGT ATTCGAATAC GTCGGCGAAA TGTCCAAAGA TTATATCCAT TCAGTCGTTG
GGTTGCTCGA AGATGCTCTC ACTGATCGAG ATCACGTCCA CCGACAAACG GCTTGTGCCA
TTGTCAAGCA CCTGGCGATT GGTGTCGCCG GCTTGGGTTA CGAAGAGGCG CTCACACATT
TGTTGAACCT TGTCTGGCCA AACATTTTTG AAACAAGTCC ACACGTTATT GGTGGTGTGA
TGGATGCTAT CGAAGCGATG AGACTTGGTA TTGGATCTGG TGTCGTGTTG AGTTATGTGT
TGCAAGGGTT GTTCCACCCT GCCAGGCGAG TAAGGGAAGT TTACTGGAGG ATGTACAGTG
AGTATCTGTT TTTTATTGCA ATGGGGAGCA AGGCTAATTA CGTCTCCGTA GACACTTTGA
TTCTTGGATC ATCAGACGCG ATGGTACCCT TCTACCCTGC TTTGGGTTCA GAGTCCGATT
TGGCATCTGG ACAGGATTAC ACAAGGCATC AGCTCATGAT GTGGATCTAG AAAGGGGAAT
GGGATGGAGT AATAGTGCGA AATTGAAATG CATGTTGTAT AATGTT
|
|---|
| Protein sequence | MSDEEYPQLQ SYTAPQDILD EHAELADEDE TPDAFQDKAK SKQVAARQSD YHLRRFNRTD
GQGEGEDESY EERMRRINLE KEEEKVRRYK EKMEKEEKER GEMRVDDKTP PRELTGGDTP
PRKALIGDET PPRAQAGDVT PPRKKRRWDT EPEVKQEVKE EVKEEVKEEE PKKRRSRWDQ
TPAEAPPEKK RSRWDQTPAQ TASSSVLAAP TNLAKPSGIV LVEDKRYRRM TDEELDSLLP
GSEEGYVVVP VPDDYHPAPS VRKMVPQQAE AGFMMQDETD AARARAAAGG LQGTTEQTEI
DGIGTLQFLK PEDTQYFAKV LGEGGGEEND AEYTVEELKE RKIMRLLLKI KNGTPPVRKT
ALRQITDRAR EFGAGPLFDK ILPLLMERTL EDQERHLLVK VIDRVLYKLD DLVRPYVHKI
LVVIEPLLID EDYYARVEGR EIISNLAKAA GLAHMISTMR PDIDHVDEYV RNTTARAFSV
VASALGIPAL LPFLRAVCRS KKSWQARHTG IRIIQQIAIM SGCAVLPHLR NLVDAIADGL
KDEQQKVRTM TALALAGLAE AAAPYGIESF DNVLKPLWLG IRQHRGKTLA AFLKAIGYII
PLMDPEYAGY YVRECMPILI REFQTSDEEM RRIVLQVIKQ CASTEGVTPS YIKEEVLPEF
FKAFWVRRMA LDKRNYKQLV ETTVELANKA GVAEIVGRTV NDLKDESEPF RKMVMETITK
VVSNIGAADV DERLEVLLID GIIYSFQEQT FEDTVMLDGF ATVVASLGPR VKPYLPQIVS
MILWRLTNKS AKVRMLAADL TTKLAPIIKS CKEDVLLSKL GVVIFEQLGE EYPDALGSLI
AAEGAIANVV GMTEMNPPVK DLLPRMTPIL RNRHEKVQEA TINLIGRIAD RGAEYVPAKE
WMRICFELLD LLKAHKRAIR RAAVNSFGYI AKAIGPQDVL SVLLTNLKVQ ERQSRVCSTV
AIAIVAETCG PFTCIPAILN EYRTPELNVR NGCLKALAFV FEYVGEMSKD YIHSVVGLLE
DALTDRDHVH RQTACAIVKH LAIGVAGLGY EEALTHLLNL VWPNIFETSP HVIGGVMDAI
EAMRLGIGSG VVLSYVLQGL FHPARRVREV YWRMYNTLIL GSSDAMVPFY PALGSESDLA
SGQDYTRHQL MMWI
|
|---|
| |