Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CNA05480 |
Symbol | |
ID | 3253216 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Cryptococcus neoformans var. neoformans JEC21 |
Kingdom | Eukaryota |
Replicon accession | NC_006670 |
Strand | + |
Start bp | 1469420 |
End bp | 1472855 |
Gene Length | 3436 bp |
Protein Length | 944 aa |
Translation table | |
GC content | 47% |
IMG OID | 638252868 |
Product | DNA ligase, putative |
Protein accession | XP_566872 |
Protein GI | 58258919 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GACGGACACT ACTTTCCGTC TGCCATAACG ATCACCTTCC CTCGTCGCTC ATCCACAGCC TGCCGTCGGC CTTGTAGGCA TCCAAGATGC CCGCTGACAG CAAAGTCAAA AGGGGAGCGA AACCACAGGC AACACCCATC ACACCGCCCA GTAAGAAATT CAAGCAAGCG GCTGTCACCC AACAACGTCC CATATCCTCT TTTTTTCACT CACCTGTTAA AAGCAGCATC AAGGGCAAGG AGGTCATTAT CATAGAAGAT TCAGATTCAG ATGATTATCC TGAGTCCTCA ACCCAGGCGG CGATAGCACA TGACGGGAAT GGTGATGTGG AATCATCCAG AAACCATGTT CTTCAACTAC CTGAAGAGAA TCAGATAAGC TCCCTCAGCT GTGTAAAGGA GAAAGATGGA CATGGTATGG CCAGTACTTC AAAAGTTTTT CATGAAAGAT CGAAGACAAC GCCCAATGGG ACGGCTATCT CGTCACGAAC GGAAGGACAA AGTGATCGAG TGCACTACTT CTCCCGAAAA TCCCAGAGAA CAATAACTGG GGACGAACCT GTTCCTCCCT CCAGTATCAC TACTTGTGCT TCAGAAGACT CGGTTCAAAA TATAGATTTT GATCGCGACC CTCTCGCCTT CGATCCGTCC CGGGTTATAG CAACTTCCTG GCCCAAGGGT CGTTTACCGT ACAGTATTCT CGTCAGCGTG TATGTACAGC TCTCCAGTAC AAAGTCGCGA TTAGCTATCG TACGAATCTT AACAAAGTAC GTTCAAAATC CGTCCCTGAA TTGGTACCTA TGCATGCTAA ACAAATGTTA ACCCATCATG CAGCTTCCTT CATTTGCTCA TGCACACTTC ACCACCTGAT TTGACACCTT GCCTTTATCT CCTTTCCAAT CACCTTACCC CTTCCTACAT CCATTGTGAT CTTGGCATTG GATCTTCTAT ATTGTCCAAA AGTATACAAG AAATTTCGGG CCTTCAAGCT CGCGATCTCA AACACCTATG GCAAAAATAT GGCGATCCTG GCGATGTTGC TTTCGAAGCG AAAAACAAAC TACGAACTTT GGTGCAACCA GCTCCGCTTT TGGCTGGAGA AGTGTATGAT AAGTTGCTGG AAATTGCGAA AGTGAAGGGC AGTAATAGCG GGAAAATAAA AAATGAGCTA GTCAGAAAGT TGTTGATTCG GGCCAAAGGA GAGGAAGTCA GATTTCTTGT CCGAAGTATA GTAGGCAACT TGAGGGTAAG CTTAGATGCC CTTTTCAAGG CCCGTCTTTG GACTCATTAG AGTGATTTAC TGCAGATAGG TGCCGTCAGG CTGGTAGGTC TCGTTTGCAA CTATCCAAGC TACAATTTCT AATTTATTGA CAGACCCTTC TGACCGCCTT GGCACGCGCC ACCACTATAA CACGGCTTCC AGCTGACCTT AAGCAGTCTA TAATACCCCT TCCAAGGGCT ACAGCCAACG ATGGCAGGAA TGATAAACGC TCAGTCATTA CTAAAGCACC TCCAGACGTT GCCCGCGATT CCGCAGAGAC TCTCTGTCTA GATGCCATAC GCATAGTACG GAAAGTGTAT GTACGACATC CAAATTACGA AGATCTTGTA GCCGGCCTCA AGGAAGGAGT TGAAAGTTTG GAGGATAAAG TGCCTGTGAG CGTAGGGATT CCACTGTCTC CCATGCTGGG GTCCATCACA AGATCACTGA ACGAGGTGTT CACGAGACTG GGACATCTTT CGTTTACAGC AGAGGCGAAG TTAGATGGTC AGAGAGGACA ACTTCATATC AGACTGGATG GCCCGGAAGG AAAAGATGAT GGAGGGGGGA GATGGGTTTA TGCGGATAAT GGTACTAAAG TTTGGGTTAG GCTATTCAGC AGGTAGGTGA AGATGTTTAA CATGCGCTCT GTATTTGTGC TTAGGAGGCA TGTGACGGAT TGGCAGGCAC TTGGAAGACA TGACCGACAA GTACCCCGAT ATCTGTCACC TAGCTCTTGA TCTTCTCTCG CGACCCCTTG CAACAGAAAG GCCGCCATTC CCAGCCGTTT CCAGTCGACC ATTTTCAAGA GTCATCGATT TACTACACAT CAATAATATC ACATCAGTGG TTATGGATAC CGAGATTGTA GCACTGGACA AGGATACCGG TAACTTTCGA ACCTTTCAAG AACTGTCTAA CAGAGCGAAA AAAGACGTGA AAATGGAGGA AATTAAAGTT ATAGTTGGGG TCTTTGCTTT TGATTTAATG GTGCTCAATG ATGTCGTAAG TAGTTGAACT CGGCTGCTTA ACGGTAATAA TCCTATGCTG AATCTCTCAA AGTCATTACT GGACGTCCCT TTTTCACATC GGAGACATCT CCTTCACAGT CTGCTCCCCC CTTTCGCTCC CAATTCAAAT GAAGTTGGAC ACCCAGTGGC ACGTTTCACA CATGTCGAAT ACATTGATTC TGTCCATCTC ACTGATCCTG AGGCGGAATT GCAAGCATTC TTCGAGAGGG TTGTGGAAAA AAAGTGCGAA GGCTTGATGG TCAAATTGCT GGAAAACGGG GAAGGCTTGG CTGGGGAAGA GGCGACAGAA GATAGTTTAG GTCAAGAAGG GGGCCTGGAA GTTAAGTCGG AGCAGAAGAA TGGGAGTAAG AGTAAGCGTC AACCTCTTCC CGCTACATAC GAGCCAGATC AGCGCAGTCA AGGTTGGCTC AAGGTAAAGA AAGGTAAGTG TGGTTGTGAA TTGATTCTGC TTCCAGAAGC CTCTCTGACC TCCCTCAAGA TTATCTAGAA GGGTTAGGGG ATTCTCTCGA TCTCGTGCCC ATTGGCGCGT GGTGGGGTCA GGGCCGTAAA GCGGGTTGGT GGAGTCCTAT TCTCTTAGCC TGCCACAATC CTGATAGTGG CGCCCTGGAA GCGGTCTGCA AATGCATGTC CGGTAAGTTT TGTTCGAAAA GGCTGTGATG TTGAAGCTGA CCAAACTGTA CTAGGGTTTT CTGACGCATT CTACAAAGAT CTTAGCAAGC GCTATCCTGC CGAAGGAATG CCGAGTAAAT GCAGCAAAAT AGCACCTATT GGATTTGTAA ATACGAACGG CTTAATACCA GACGTGTGGT TTGAGCCTAG CGAAGTATGG GAGATTAAAG GTGCTGAGTA AGTAACGAAA GGCAAGTTTT ACTATATTCT GGCTGATAGG CTGGTAGCAT CACCCTCTCT CCGGTCTATC CGGCGGCTTC ATCGCATCTT GGATCTGAAA GAGGGTTGAG TGTCCGATTC CCTCGTTTCA TACGCATGCG AGACGACAAG ACATGGGAGG ACGCTATGAC AAGTGATCAG CTTGCCGATA TGTACAGACG CCAGATAAAA GAAGGCGAGA AGACAACCAA AAACTAGCCA GTCATGTTAA TTCTCAACTT TGTAGAGATC TATAATGAAA AACATGCGCC TATACA
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Protein sequence | MPADSKVKRG AKPQATPITP PSKKFKQAAV TQQRPISSFF HSPVKSSIKG KEVIIIEDSD SDDYPESSTQ AAIAHDGNGD VESSRNHVLQ LPEENQISSL SCVKEKDGHG MASTSKVFHE RSKTTPNGTA ISSRTEGQSD RVHYFSRKSQ RTITGDEPVP PSSITTCASE DSVQNIDFDR DPLAFDPSRV IATSWPKGRL PYSILVSVYV QLSSTKSRLA IVRILTNFLH LLMHTSPPDL TPCLYLLSNH LTPSYIHCDL GIGSSILSKS IQEISGLQAR DLKHLWQKYG DPGDVAFEAK NKLRTLVQPA PLLAGEVYDK LLEIAKVKGS NSGKIKNELV RKLLIRAKGE EVRFLVRSIV GNLRIGAVRL TLLTALARAT TITRLPADLK QSIIPLPRAT ANDGRNDKRS VITKAPPDVA RDSAETLCLD AIRIVRKVYV RHPNYEDLVA GLKEGVESLE DKVPVSVGIP LSPMLGSITR SLNEVFTRLG HLSFTAEAKL DGQRGQLHIR LDGPEGKDDG GGRWVYADNG TKVWVRLFSR HLEDMTDKYP DICHLALDLL SRPLATERPP FPAVSSRPFS RVIDLLHINN ITSVVMDTEI VALDKDTGNF RTFQELSNRA KKDVKMEEIK VIVGVFAFDL MVLNDVSLLD VPFSHRRHLL HSLLPPFAPN SNEVGHPVAR FTHVEYIDSV HLTDPEAELQ AFFERVVEKK CEGLMVKLLE NGEGLAGEEA TEDSLGQEGG LEVKSEQKNG SKSKRQPLPA TYEPDQRSQG WLKVKKDYLE GLGDSLDLVP IGAWWGQGRK AGWWSPILLA CHNPDSGALE AVCKCMSGFS DAFYKDLSKR YPAEGMPSKC SKIAPIGFVN TNGLIPDVWF EPSEVWEIKG ADITLSPVYP AASSHLGSER GLSVRFPRFI RMRDDKTWED AMTSDQLADM YRRQIKEGEK TTKN
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