| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CJJ81176_1391 |
|---|
| Symbol | |
|---|
| ID | 4683078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Campylobacter jejuni subsp. jejuni 81-176 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008787 |
|---|
| Strand | + |
|---|
| Start bp | 1313312 |
|---|
| End bp | 1314751 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 639854117 |
|---|
| Product | cryptic C4-dicarboxylate transporter DcuD, authentic frameshift |
|---|
| Protein accession | YP_001001047 |
|---|
| Protein GI | 121613618 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3069] C4-dicarboxylate transporter |
|---|
| TIGRFAM ID | [TIGR00771] c4-dicarboxylate anaerobic carrier family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000902807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGGTA TTGTTTTTTC TTTATTTAGT GTTTTTTTAC TTGTTTTTAT GCTTTATAAA
AAAATCAATG CTCACATGGC ATTGCTTTTA AGTGGTTTAC TTTTACTTTC CTTAGCTGCT
ATTTTTGGAC TTTCTCCACA CATTGTCGCT AAAGGTTCTT TAAATTTAGG TTTTTTTGAT
ATTTTTCAAG TTTTTAATCA AACCATGTCA AGTACATTAG CAGGACTTGG ACTTACACTT
ATGACTATAG CAGGTTTTTC TGCTTATATG GATCATGTAG GGGCTTCTTA TGCACTTTTT
AAAGTTTTTG AAAAACCTTT AAAAGCCGTA AAATCTCCTT ATGTTTTACT CATAGTTGCT
TATTTTATCG TGCAACTTTT AGTTCTTTTC ATCCCTTCTC ACGCAGGCTT GGCACTTTTA
CTTATGGTTA CTATGTATCC TATACTTGTA CGCTCTGGTG TTTCAAAACT TTCTGCCTTA
AGTGTGATTG CGATTTGTCA ATATATCGAT CATGGACCTG GAAGTGGAAA TGTGATCATG
GCGTCAAAAG TAGCTGAAGT TGATCCTGCA ATTTATTTTT TTCATTATCA ACTCCCTACA
ACCTTGCCTA TCATTATAGC TGTAGGTATT GCGATATATC TTTGCAATAA ATTTTTTGAC
AAAAAAGATA ATTTTGTCTT CAATGCACAA GAAATTGAAA AAGAACTAAA TGAAAATGAA
GGCAAAGAAA AAGAACTTAA AAAGCCTCCT AGAATTTATG CGATTTTACC TATAATTCCT
TTGGTTTTAA TCCTAGGATT TAGTTCCGTG CTTGATAGCA TCTTGGTTTT AATGGGAATA
AGTAGTGCTG AAGAAGTTAA AGCAGCTGCT AGTACTGCCA TTAAAATGAA TGTTCCAGTA
GCAATGGTGA TTTCAACTTT TGTGGCTATT ATTTTTGAAA TGATACGCTA TAAAAGTATA
GTAGAAACTC TTAATTCTAT TATGATTTTC TTTAAAGGAA TGGGACATTT ATTTGTTATC
ACAGTTTCAC TCATCGTTTG TGGTCAAGTA TTTGCAAGCG GTCTTTTATC TGTAGGTTTT
GTAGATACTT TAATAGAATT TTGCAAAAAT GCAGGATTTG GAGTTTTGGC TATTATTATC
GCCGTTTCAA TCTTGCTTGC AGTTTGTGCT TTCTTAATGG GTTCAGGAAA TGCGGCATTT
TTTAGCTTTG CTCCACTTAT CCCAAATATA GCAAAACACT TTGGAGTTGA AACTATCACC
ATGATAGCAC CAATTCAAAT TATGACAGGC TTTGGAAGAT GTGTTAGTCC TATTGCACCA
GCGATTTTAG CTATCTCAGC TATTGCAAAA GTAAGTCCTT TTGCCGTGGT TAAAAGAACA
GCTATTCCTA TGCTTGTAGC GGCTATTGTA AATGTTATTA TGACTTATAT CTATCTTTAA
|
|---|
| Protein sequence | MLGIVFSLFS VFLLVFMLYK KINAHMALLL SGLLLLSLAA IFGLSPHIVA KGSLNLGFFD
IFQVFNQTMS STLAGLGLTL MTIAGFSAYM DHVGASYALF KVFEKPLKAV KSPYVLLIVA
YFIVQLLVLF IPSHAGLALL LMVTMYPILV RSGVSKLSAL SVIAICQYID HGPGSGNVIM
ASKVAEVDPA IYFFHYQLPT TLPIIIAVGI AIYLCNKFFD KKDNFVFNAQ EIEKELNENE
GKEKELKKPP RIYAILPIIP LVLILGFSSV LDSILVLMGI SSAEEVKAAA STAIKMNVPV
AMVISTFVAI IFEMIRYKSI VETLNSIMIF FKGMGHLFVI TVSLIVCGQV FASGLLSVGF
VDTLIEFCKN AGFGVLAIII AVSILLAVCA FLMGSGNAAF FSFAPLIPNI AKHFGVETIT
MIAPIQIMTG FGRCVSPIAP AILAISAIAK VSPFAVVKRT AIPMLVAAIV NVIMTYIYL
|
|---|
| |