| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CJJ81176_0509 |
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| Symbol | rpoB |
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| ID | 4683081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Campylobacter jejuni subsp. jejuni 81-176 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008787 |
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| Strand | + |
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| Start bp | 440665 |
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| End bp | 444801 |
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| Gene Length | 4137 bp |
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| Protein Length | 1378 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 639853232 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001000185 |
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| Protein GI | 121613040 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000831874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGCGATA TGTTAGATAA TAAATTAGGA AATCGTTTAA GAGTAGACTT CTCAAACATT
TCAAAACAAA TAGAAATCCC AAATCTTCTA CAATTACAAA AAAAGAGTTT TGATTATTTT
TTAAATCTTG ATAATGGTGA AAGTGGTATA GAAAAAGTTT TTAAATCAAT TTTTCCTATT
CATGATCCGC AAAATAGATT GAGTCTTGAA TATGTTAGTA GTGAAATAGG CAAGCCAAAA
TATACCATTC GCGAATGCAT GGAAAGAGGT TTGACTTATT CTGTAAATTT AAAAATGAAA
ATCCGTCTTA CTCTGCATGA AAAAGATGAA AAAACAGGGG AAAAAGTTGG CGTAAAAGAT
ATTAAAGAAC AAGAAATTTA TATCCGCGAA ATTCCTTTAA TGACAGATCG TGTATCTTTT
ATCATTAATG GGGTTGAGAG GGTGGTTGTA AATCAATTAC ATAGAAGCCC TGGTGTTATT
TTTAAAGAAG AAGAAAGCTC AACGGTTGCA AATAAGCTTG TTTATACAGC ACAAATTATT
CCTGATCGTG GTTCGTGGCT TTATTTTGAA TACGATGCCA AAGATGTTTT GTATGTAAGA
ATCAACAAGC GTAGAAAAGT TCCTGTAACT ATGCTTTTTA GAGCTTTAGG GTATAAAAAA
CAAGATATTA TTAAGTTGTT TTATCCTATT CAGACTATAC ATGTGAAAAA AGATAAATTT
TTAACAGAAT TTAATCCAAA TGATTTTATG GATAGAATAG AATATGATAT TAAAGATGAA
AAAGGAAAAA TCGTTCATCA AGCTGGAAAA AGACTTACAA AGAAAAAAGC AGAACAGCTT
ATTAAAGACG GTTTAAAATG GATAGAATAT CCTGTAGAAA TTTTACTTAA TCGTTATTTA
GCAAATCCTA TTATTGATAA AGAAAGTGGA GAGGTTTTAT TTGATTCTTT AACTTTGTTA
GATGAAAGTA AGCTTGCTAA GATTAAAGAG CAAAAAAGTT TTGATATAGC AAATGACTTG
GCTAATGGCG TTGATGCAGC GATTATTAAC TCCTTTGCTC AAGATGGAGA AACTCTAAAA
CTTCTTAAAC AAAGTGAAAA TATCGATGAT GAAAATGATT TAGCTGCGAT TAGAATTTAC
AAAGTTATGC GCCCAGGTGA ACCTGTGGTA AAAGATGCAG CGAAGGCTTT TGTAAATGAT
TTATTCTTCA ATCCTGAAAG ATACGATCTT ACCAAGGTAG GTCGTATGAA AATGAACCAT
AAGTTAGGTC TTGAAGTGCC TGAGTATGTT ACTGTTTTGA CTAATGAAGA TATTATTAAA
ACTGCAAAAT ATTTAATTAA AGTAAAAAAT GGTAAAGGAC ATATTGATGA TAGAGATCAT
TTAGGAAATC GTCGTATCCG TTCTATAGGT GAACTTTTAG CCAATGAACT TCATTTAGGT
CTTGCAAAAA TGCAAAAGGC GATCAGAGAT AAATTTACTT CTTTAAATGC GGATCTTGAT
AAAGTAATGC CTTATGATTT AATCAATCCT AAAATGATTA CTACAACTAT CATTGAATTT
TTTACAGGAG GTCAGCTTTC GCAATTTATG GATCAAACCA ACCCTTTAAG TGAGGTTACT
CATAAGCGTC GTTTGTCAGC GCTTGGTGAA GGTGGGCTTG TAAAAGAAAG AGCAGGTTTT
GAAGTGCGTG ATGTTCACGC GACACATTAT GGTAGAATTT GTCCAGTTGA AACACCTGAA
GGTCAAAATA TTGGTTTGAT TAACACTCTT TCTACTTATG CAAAAGTAAA TGAACTTGGC
TTTGTTGAAG CACCATATAG AAAAGTTGTA AATGGTAAAG TGACTAATGA AGTTGTTTAT
CTTACAGCAA CACAAGAAGA AGGCTTATTT ATCGCACCAG CTTCAACTAA GGTTGATGCT
AAAGGCAATA TAGTAGAAGA ATTTGTTGAG GCTAGACAAG ATGGTGAAAC TATACTTGCA
AGACGCGAAG AAGTGCAATT AATCGATCTT TGCTCAGGTA TGGTTGTTGG GGTTGCGGCT
TCTTTGATTC CGTTTTTAGA GCACGATGAT GCAAACAGAG CACTAATGGG TTCAAACATG
CAACGTCAAG CTGTGCCACT TCTTACTGCT TCAGCTCCGA TAGTAGGAAC AGGTATGGAA
CAAATTATTG CGCGTGATGC TTGGGAAGCT GTTAAAGCAA AGCGTGGCGG TGTGGTTGAG
AAAGTGGATA ATAAAAGCAT TTTCATTTTA GGTGAAGATG ATAAAGGTCC ATTTATTGAC
CATTATACTA TGGAGAAAAA TTTAAGAACC AATCAAAATA CAAATTATAT TCAACATCCT
ATTGTTAAAA AAGGTGATAT AGTAAAAGCA GGACAAATTA TCGCAGATGG TCCTTCTATG
GATCAAGGCG AACTTGCTAT AGGTAAAAAT GCTTTAATCG CTTTTATGCC TTGGAATGGT
TATAACTATG AGGATGCTAT AGTTGTAAGT GAGAGAATTA TTCGTGAAGA TACCTTTACA
AGCGTGCACA TTTATGAAAA AGAAATTGAA GCAAGAGAAC TAAAAGACGG CATAGAAGAA
ATTACCAAAG ATATCCCAAA TGTAAAAGAA GAAGATGTTG CACATCTTGA TGAGAGCGGT
ATTGCAAAAA TTGGCACCCA TATCAAACCA GGTATGATTT TGGTGGGTAA GGTTTCTCCA
AAAGGTGAGG TTAAACCAAC TCCTGAAGAA AGACTTTTAA GAGCTATTTT TGGGGAAAAA
GCAGGACATG TTGTGAATAA ATCCCTTTAT GCAACCGCTT CTTTAGAGGG TGTTGTTGTG
GATGTTAAAA TTTTCACTAA AAAAGGCTAT GAAAAAGATG ATCGCGCAAT AAAATCTTAT
GATAAAGAAA AAATGGCTTT AGAAAAAGAA CATCATGATA GACTTTTGAT GATGGATAGA
GAAGAAATGC TTCGTGTTTG TGCTCTTCTT TCCAAAGCCC CTTTAAATAG TGATCAAAAA
ATTGGAGATA AAAATTATAA AAAAGGACAA ACCGCAGATA TTAGCGAACT TGAAAAAATC
AATCGTTTTA CTTTAACAAC TTTGATTAAA GCTTATTCTA AAGAGATTCA AAAAGAATAC
GATGATTTAA AAAATCATTT CCAAAATGAG AAGAAAAAAT TAAAAGCAGA ACACGATGAA
AAGCTTGAAA TTTTAGAAAA AGATGATATT TTACCAAGTG GGGTAATTAA GCTTGTTAAA
GTTTATATTG CTACAAAGAG AAAGCTTAAA GTCGGTGATA AAATGGCAGG ACGTCACGGA
AACAAAGGTA TAGTTTCAAC TATAGTTCCT GAAGTGGATA TGCCTTATTT ACCAAATGGT
AAAAGTGTGG ATATTGCACT TAATCCACTT GGCGTTCCAA GTCGTATGAA TATAGGCCAA
ATTTTAGAAA GCCATTTGGG TTTAATTGGA CTTAGACTTG GAGATCAGAT TCAAGAAATT
TTTGACAGAA GGCAAAAAGA TTTTCTTAAA GAATTAAGAG CAAAAATGCT TGAAATTTGT
TCTATTCCAA GACTTGCAAG CGAAAAAGAA TTTATTAAAA GCTTAAGCGA TGAAGAGCTT
TTAAACTATG CTAGAGACTG GAGTAAAGGA GTTAAATTTG CTACTCCTGT TTTTGAAGGT
GTAAATATAG AAGAATTTAG CAAGCTTTTT GAAATGGCCA AGATAGATAT GGACGGCAAA
ACAGAACTTT ATGATGGACG CACGGGTGAG AAAATCGCAG AGCGTGTTCA TGTAGGATGT
ATGTATATGC TAAAACTCCA CCACTTGGTT GATGAGAAAG TTCACGCAAG AAGTACAGGA
CCTTACAGCT TAGTTACCCA ACAACCTGTG GGTGGTAAAG CACTCTTTGG GGGACAAAGA
TTTGGGGAGA TGGAAGTTTG GGCACTTGAA GCTTATGGAG CGGCTCATAC TTTAAGAGAA
ATGTTAACTA TCAAATCAGA CGATGTAGAA GGTAGATTTA GTGCTTATAA AGCATTGACA
AAAGGTGAAA ATGTTCCAGC AACAGGAATT CCTGAAACAT TTTTTGTATT AACCAATGAG
CTTAAATCTC TTGCTTTAGA TGTTGAGATT TTTGATAAGG ATGAAGATAA TGAGTAA
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| Protein sequence | MCDMLDNKLG NRLRVDFSNI SKQIEIPNLL QLQKKSFDYF LNLDNGESGI EKVFKSIFPI
HDPQNRLSLE YVSSEIGKPK YTIRECMERG LTYSVNLKMK IRLTLHEKDE KTGEKVGVKD
IKEQEIYIRE IPLMTDRVSF IINGVERVVV NQLHRSPGVI FKEEESSTVA NKLVYTAQII
PDRGSWLYFE YDAKDVLYVR INKRRKVPVT MLFRALGYKK QDIIKLFYPI QTIHVKKDKF
LTEFNPNDFM DRIEYDIKDE KGKIVHQAGK RLTKKKAEQL IKDGLKWIEY PVEILLNRYL
ANPIIDKESG EVLFDSLTLL DESKLAKIKE QKSFDIANDL ANGVDAAIIN SFAQDGETLK
LLKQSENIDD ENDLAAIRIY KVMRPGEPVV KDAAKAFVND LFFNPERYDL TKVGRMKMNH
KLGLEVPEYV TVLTNEDIIK TAKYLIKVKN GKGHIDDRDH LGNRRIRSIG ELLANELHLG
LAKMQKAIRD KFTSLNADLD KVMPYDLINP KMITTTIIEF FTGGQLSQFM DQTNPLSEVT
HKRRLSALGE GGLVKERAGF EVRDVHATHY GRICPVETPE GQNIGLINTL STYAKVNELG
FVEAPYRKVV NGKVTNEVVY LTATQEEGLF IAPASTKVDA KGNIVEEFVE ARQDGETILA
RREEVQLIDL CSGMVVGVAA SLIPFLEHDD ANRALMGSNM QRQAVPLLTA SAPIVGTGME
QIIARDAWEA VKAKRGGVVE KVDNKSIFIL GEDDKGPFID HYTMEKNLRT NQNTNYIQHP
IVKKGDIVKA GQIIADGPSM DQGELAIGKN ALIAFMPWNG YNYEDAIVVS ERIIREDTFT
SVHIYEKEIE ARELKDGIEE ITKDIPNVKE EDVAHLDESG IAKIGTHIKP GMILVGKVSP
KGEVKPTPEE RLLRAIFGEK AGHVVNKSLY ATASLEGVVV DVKIFTKKGY EKDDRAIKSY
DKEKMALEKE HHDRLLMMDR EEMLRVCALL SKAPLNSDQK IGDKNYKKGQ TADISELEKI
NRFTLTTLIK AYSKEIQKEY DDLKNHFQNE KKKLKAEHDE KLEILEKDDI LPSGVIKLVK
VYIATKRKLK VGDKMAGRHG NKGIVSTIVP EVDMPYLPNG KSVDIALNPL GVPSRMNIGQ
ILESHLGLIG LRLGDQIQEI FDRRQKDFLK ELRAKMLEIC SIPRLASEKE FIKSLSDEEL
LNYARDWSKG VKFATPVFEG VNIEEFSKLF EMAKIDMDGK TELYDGRTGE KIAERVHVGC
MYMLKLHHLV DEKVHARSTG PYSLVTQQPV GGKALFGGQR FGEMEVWALE AYGAAHTLRE
MLTIKSDDVE GRFSAYKALT KGENVPATGI PETFFVLTNE LKSLALDVEI FDKDEDNE
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