| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3697 |
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| Symbol | rpoD |
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| ID | 4186419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 4269385 |
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| End bp | 4269990 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638073684 |
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| Product | sigma-70 family RNA polymerase sigma factor |
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| Protein accession | YP_680273 |
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| Protein GI | 110640063 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAACG CAGCTATTAG TGATTCCACA TTGGTTTCAC AATATATCCA AGGTAACGAA
GAGGCTTTTG CAGAACTCAT AAAAAGGCAC AAATCAAAAG TTTACTCTAC TATTTATTTA
ATTGTGAAAG ATCGCTACCT GGCAGAAGAT CTTTTGCAGG ATGTGTTTAT TAAGGTCATT
CATAAAATGA AAGGTGGCCA GTACAACGAC GAGGGCAAAT TTTTACCTTG GGTCGTCCGT
ATCGCGCATA ATTTAGCCAT TGATTATTTC AGACGTAATA AAAGATATCC AACAATCGTT
ATGGATGAAG GAATGAATAT ATTCAACTCA CTTAACTTTT CTGAAGATTC TACGGAATCT
ATACAGATAA AAGGTGAGAA TGAAGCGTTA ATCCGTTCTT TGATCCACAA ACTACCTGAA
AGCCAGCGTG AAGTTGTTTT AATGAGACAC TTTTCGGACA TGAGTTTTCA GGAAATTGCG
GACTCTACAG GTGTTAGTAT TAATACGGCA CTCGGAAGGA TGCGATACGC TTTAATCAAC
CTCCGCAAGG AGCTGACAAA GCAACCAAAG CCGATTGTGT ATGATAAAAA CGTTTACCCA
AAATGA
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| Protein sequence | MKNAAISDST LVSQYIQGNE EAFAELIKRH KSKVYSTIYL IVKDRYLAED LLQDVFIKVI
HKMKGGQYND EGKFLPWVVR IAHNLAIDYF RRNKRYPTIV MDEGMNIFNS LNFSEDSTES
IQIKGENEAL IRSLIHKLPE SQREVVLMRH FSDMSFQEIA DSTGVSINTA LGRMRYALIN
LRKELTKQPK PIVYDKNVYP K
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