| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3546 |
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| Symbol | cpxA |
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| ID | 4186600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 4100646 |
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| End bp | 4102406 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638073533 |
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| Product | sensor protein (histidine protein kinase), acting on arcA |
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| Protein accession | YP_680122 |
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| Protein GI | 110639912 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00933538 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0548176 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTAAAAT GCATTTTTGT TGCATCATTG TTTATATTAA TATTCATTTC AACATTTACG
TATAAGCACT CTACAGGCCT CATTCATTCA TCCAAACGCT TAATTCATTC GCATAAAGTA
AATCTGGAGC TGGAGCAATT AAACTCGCTG CTTAAAGATG TTGAAATTAA TCAAACGGCT
TATTTCATTT CAAGAGACAC CACTTTCCTT TCTGCATTTA ATAATTCAAG AACCCGCATA
AGCCAATCTA TAAACAGACT GCAGGGTTTG ACACAGGATA ATTTAAAACA ACAGAACAAT
TTAGATTCTC TTGTAAAACT CATAAAGGTT CGATACAATA TTCTTTTTGA GAACTCCATT
AATCTAAATG ACTCTGTGCC CGTAAATGCA AAGCGCTTTA ACAAGAGTTT GATAGACGGG
AAGGCTGTAA TGCGCACAAT CCGCAGTCAG ATTAACCAGA TGATCGAGCT GGAAAATATT
TATTTAGTAG AACGGCAGGA AAAGTATGAG AACGAATCGT TTCTTACTCC ATTCTATTCC
TTAATGCTGT TATTGTTTTC TTTAATCGTA TTTATTTTTT CATATTATAA AATAAGCCGC
GATTTAGAAT CGCTTAAAAA GTCAAACCTT GTTCTGAAAA TTGCTACCGA AACGATGAAA
CATGCCGAAG AGATCGGCGG TTTCAGTAGT TGGCAATGGG ATCTGGCCAC GAATAAATTT
ATCTATTCCG ACAATCAGCA CCGTTTACTT GGAGTTGAAC GGGATTCATT TGAATCAAGC
AATGATGCAT TTATTAATTT TGTGCATCCG GAAGACAGGC ATGTTATAAA AAATGGAGAG
CGAATGGTAT TGGATGAACA GCAATCCAGT GTCGCATTCT TCAGAGTGAT CCGGAAAGAT
GGCCAAATGA GGTACTTTAA ATCTATTGGC AAGCTTCTTA CCGATTCTTC AGGCAATAAA
ATTCTCATTG GTATAAACAA TGATATCACA GAAGAACATC TGGTGAGCAA ATCGCTGGAA
GACCGAAACA GTGAATTAGA AAAAAGCAAT AAAGAACTGG CATCCTTCAA CCACGTTGCC
AGCCATGACC TTCAGGAGCC GCTTAGAAAA ATTCAAACAT TTATTTCGCG GATATATGAG
AAAGAAAGCA GCAATCTATC ACAGCAAGGA AAAGATTACC TGGAAAGGAT ACAGATTGCA
GCAAAACGCA TGCGTGTATT GATAGATGAT CTGCTATTAT TTTCACGAAC AAATAAAGTT
GAAAAAATAT TTGAACACAC AGACCTCAAT CTGTTGCTGG ATGAGGCAAT ACAGGAACTG
ACGCAGCAAA TAGAAGAGAC GGGAGCAACG ATTTCTTCAG ATCCTTTGCC GCAACTTATT
ATAATACCGT TCCAGATTCA ACAGTTATTT ATAAATCTGA TTGCAAATTC TTTAAAATAC
AGCAAGCCAG ATGTGCCGCC GGCAATTAAA ATTGAAAGCT CTATTATCAA TTCCAATGAT
TATGAAGCAA TTATTAAAGA AAAGAATAAA GAGTTTTATA AAATATCCAT TATGGATAAC
GGACTGGGTT TTGATCAGGA ATACGAAGAG GCGATTTTTA CATTATTTTA TCGTTTGCAT
AACAATTCAG ACTATCCGGG AACAGGAATA GGCCTGGCTA TCTGTAAAAA AATTGTTGAA
AATCATAAAG GTTACATCAG AGCAGAAAGC GTTCCAGGCA AAGGATCTGT CTTTAGTTTT
TTCCTGCCGC TGTATCATTA A
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| Protein sequence | MLKCIFVASL FILIFISTFT YKHSTGLIHS SKRLIHSHKV NLELEQLNSL LKDVEINQTA
YFISRDTTFL SAFNNSRTRI SQSINRLQGL TQDNLKQQNN LDSLVKLIKV RYNILFENSI
NLNDSVPVNA KRFNKSLIDG KAVMRTIRSQ INQMIELENI YLVERQEKYE NESFLTPFYS
LMLLLFSLIV FIFSYYKISR DLESLKKSNL VLKIATETMK HAEEIGGFSS WQWDLATNKF
IYSDNQHRLL GVERDSFESS NDAFINFVHP EDRHVIKNGE RMVLDEQQSS VAFFRVIRKD
GQMRYFKSIG KLLTDSSGNK ILIGINNDIT EEHLVSKSLE DRNSELEKSN KELASFNHVA
SHDLQEPLRK IQTFISRIYE KESSNLSQQG KDYLERIQIA AKRMRVLIDD LLLFSRTNKV
EKIFEHTDLN LLLDEAIQEL TQQIEETGAT ISSDPLPQLI IIPFQIQQLF INLIANSLKY
SKPDVPPAIK IESSIINSND YEAIIKEKNK EFYKISIMDN GLGFDQEYEE AIFTLFYRLH
NNSDYPGTGI GLAICKKIVE NHKGYIRAES VPGKGSVFSF FLPLYH
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