Gene CHU_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3500 
Symbol 
ID4183894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp4051735 
End bp4052136 
Gene Length402 bp 
Protein Length133 aa 
Translation table11 
GC content36% 
IMG OID638073487 
Productanti-sigma regulatory factor 
Protein accessionYP_680076 
Protein GI110639866 
COG category[T] Signal transduction mechanisms 
COG ID[COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.314034 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATCCT TGCGCATACA GATCCCTTCA TTAGTAGAAA ACATTCGCAT CGTTGAAAGT 
TTTATTGATA ATGTTAAAGA CACGTTTGAA ATAGATGATG ATATCTATGG CAACATAATG
GTTGCTATTA CTGAGTCAGT AAACAATGCT ATCCGACACG GTAATAAAGA AGACAATAAA
AAGAACGTTA CATTAACGGC TTCCTGTACA GAGAATGTAT TGGTATTTAC TGTTGAAGAC
GAAGGCCCGG GTTTCAATCC TGATACACTT CCTGATCCGA CTGCTCCAGA AAACATTGAA
AAAGTAGGCG GAAGAGGAAT CTTTTTGATG AAGCATCTAG CCGATGAAGT TAAGTTTTCA
AATGAAGGAC GTAAAGTAGA GTTAACCTTT TTTAATAATT AG
 
Protein sequence
MESLRIQIPS LVENIRIVES FIDNVKDTFE IDDDIYGNIM VAITESVNNA IRHGNKEDNK 
KNVTLTASCT ENVLVFTVED EGPGFNPDTL PDPTAPENIE KVGGRGIFLM KHLADEVKFS
NEGRKVELTF FNN