Gene CHU_3056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3056 
Symboltpn 
ID4185854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3497545 
End bp3498285 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content36% 
IMG OID638073045 
ProductIS3 family transposase 
Protein accessionYP_679639 
Protein GI110639430 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.470635 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATACTCA TTGACAGAAG AAAGGCTATC AAACAACTGG TAGATACACA AAGAAAGCAG 
CTTCCTAGAT TAGGAGGAAA AAAGACTTAC CATATTATAA AGCCGTTTAT TGATCAGGCA
GAACTCAAAG TTGGCCGGGA TAAACTCTTC TCAATATTAA GGTTTTATGA TATGCTTATT
AAGCCCAGGC GCAGATATAT TCAAACAACG ATGTCTAAGC ATTGGCTCAG GAAATATCCC
AATATAGTGA AAGGGCTCAT CATACATAGA CCTGAGCTGG TATGGGTTAG TGACATCACA
TACATAAAAA CAGATGAAGG AAACTGCTAT TTAAATATGG TCACTGATGC CTACAGCAGA
AAAATAATGG GCTACTCTAT AGCAGACTCT ATGGATACAG AATCCATGAT AAAAGCGTTT
GAAATGGGAT TGAAAAATAG AAAGTATCCT GATTCAAAAT TGATTCATCA TTCTGACAGA
GGGCTTCAGT ATTGCAGTAA AGAATATGTA GCATTGTCAA ATAGCAATGG AGTAAGCATA
AGTATGACCG AACAATCTGA CCCTTATGAA AATGCGTTAG CTGAAAGGAT GAATAGAACG
CTCAAAGAAG AATTTGGATT AGGTCAAAAA ATAATAACCA GACAAGTAGC AAAAGAGCTT
ACTGAGCAAG CAATACAATT ATATAATAAC GTAAGACCTC ATTTATCATT AAAAATGAAA
ACGCCAGAAA TGGTGCATTA A
 
Protein sequence
MILIDRRKAI KQLVDTQRKQ LPRLGGKKTY HIIKPFIDQA ELKVGRDKLF SILRFYDMLI 
KPRRRYIQTT MSKHWLRKYP NIVKGLIIHR PELVWVSDIT YIKTDEGNCY LNMVTDAYSR
KIMGYSIADS MDTESMIKAF EMGLKNRKYP DSKLIHHSDR GLQYCSKEYV ALSNSNGVSI
SMTEQSDPYE NALAERMNRT LKEEFGLGQK IITRQVAKEL TEQAIQLYNN VRPHLSLKMK
TPEMVH