Gene CHU_3026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3026 
Symbol 
ID4184959 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3467986 
End bp3469191 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content37% 
IMG OID638073015 
Producthypothetical protein 
Protein accessionYP_679609 
Protein GI110639400 
COG category[T] Signal transduction mechanisms 
COG ID[COG4252] Predicted transmembrane sensor domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCAGCA TTACACTTAT TTTTACGTAT ACTCCTGTTC ATAGTCTGGA TGTTTTCAGT 
CCGATTTCGG ATGCGTTCAA AGATTTTGAA CTTACAGACA TGTATTTTTC CCAGTTTAAA
GAAAATGAAG ATGTTGAAGA CAATATTGTG TTGGTAAATA TTGGTAATCT GGATCGTGGC
GGAGTAGCAG CACTCGTTAA TACGTTAAAT GGCTTTGAAC CTAAAGCAAT TGGAATAGAT
GCATTTTTCA GACATCCTAA AGATCCGGAC CTGGACTCTG CACTGGCACA GGCTTTCTCA
CGTACAAAAA ATCTGGTTTT AGTTTCTGAA CTGATCGAAA ATCATGCAAC CGGAACGATA
GACAGCATTA AATACTCCAA TAACATGTTT ATGCAGTATG CCGAACCGGG TTTTGCAGAT
ATGATTGCAG AAGGAAAACA TAGCCTGAAT ACAGCCCGTG ACTGTATTCC GAAAGAAATT
AAAAATGGAG ATACGGTTTT ATCCTTTCCG TCTAAACTGG TAAGTATTTA TGCTCCTGAG
AAATTAAAGA GGTATTTAGC AAGAAATCAT GATGTTGAAG CCATAAACTA CGAAGGCAAT
ATTAATGTTC ATGATGAAGG AAGTACCTCA AATTCAAAAA CTGTTTTTAC CGCACTGGAT
TGGTACGAAG TTTTGGATTC ACAATTTACA CCTGAAACAA TTAAAGGAAA AATTGTAATT
ATGGGTTTTA TGGGTGCAGA AATTGGTCAG AACAACTGGC AGGATAAATT TTGCACCCCG
TTGAATAGCC AATATGTAGG CCGGACAGCA CCCGATATGT ATGGAGTTGT TGTCCATGCG
AATATTGTCT CCATGATTCT GAAAGAGAAA TATATTAATG ATATGCCTGA CTGGCTCAAC
TGGTCTCTAT CCTTAATACT GATATTTATT ATGATCTGGG GATTCAATTG GTTGTATTTG
AACACAGCAG AATGGTGGGA TGGTATTTCG ATGATTTTAT CGCTTATAGG CGTAATTTTG
CTTTCAGCCT TTATGGTTCT CATATTCCAT TTCTATAGTT ACACATTTGA TATTGCACTT
GCATCCGTGG CATTATTATT GTCTGGTAAC CTGATAGAAA TATATTGGGG AATACTTAAG
CCCCTTTATA TGAGAACAAA AGAAAAAAAT GTATCTTTAC TTAATCAAAA TAAAACCGGA
GAATAA
 
Protein sequence
MGSITLIFTY TPVHSLDVFS PISDAFKDFE LTDMYFSQFK ENEDVEDNIV LVNIGNLDRG 
GVAALVNTLN GFEPKAIGID AFFRHPKDPD LDSALAQAFS RTKNLVLVSE LIENHATGTI
DSIKYSNNMF MQYAEPGFAD MIAEGKHSLN TARDCIPKEI KNGDTVLSFP SKLVSIYAPE
KLKRYLARNH DVEAINYEGN INVHDEGSTS NSKTVFTALD WYEVLDSQFT PETIKGKIVI
MGFMGAEIGQ NNWQDKFCTP LNSQYVGRTA PDMYGVVVHA NIVSMILKEK YINDMPDWLN
WSLSLILIFI MIWGFNWLYL NTAEWWDGIS MILSLIGVIL LSAFMVLIFH FYSYTFDIAL
ASVALLLSGN LIEIYWGILK PLYMRTKEKN VSLLNQNKTG E