| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2659 |
|---|
| Symbol | tolC |
|---|
| ID | 4185878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 3041851 |
|---|
| End bp | 3043161 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638072651 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_679253 |
|---|
| Protein GI | 110639044 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ATCTTGTATT TACATGTAGC CTTTTATTTT TGGCACTGCT TAATCAGGCA
GCAGCGCAGA ATATTCTTAC ACTTGATGAA GCGATTCGTA TTACGTTAGA AAACAATTAT
AACATCAAGC TCATTGCCAA TAATCTTGAA ATCAGCAGAA ACAATGTCAA TCCCGGGGTA
GCCGGAGCAT TGCCTTATGT AGGGGGTACA CTTACAAATA CCAACAGTGT ACTCGACAGC
AGACAGGTGC AGGCCAACGG AACAGTAACG GAAAGAGCCG GTGCCAGAAA CACCGGTTTG
AATTATGGTA TAGGATTAAA CTGGACCATT TTCGATGGCT TCGGAATGTT TGCCCGATAC
GATCAGTTAA AAGAGCTTGA ACGTTTAGGC GAAGAAAATC TGCAGGTAGC AGTTATGGAA
AATGTAGCCG AGGTAACAAA AACATATTAC TATTTAGTTC AGCAGCAGCA GCAGCTGAAT
GCATATGATA CGGCTGTTTT TATTTCACAG CAACGGGTAC AATTTGCACA GAACAGATAT
CAGGTCGGTA AAGCATCAAA ACTCGAAGTA CTCAATGCAG AAGTAGATAT GAATACCGAC
ACCACCAATC TGGTTCGTCA AAATGAATTG TATAACAATA CACAGACTTC ATTAAATCAA
TTAATGGCCA GGGATCCCGG CATACGCTTT ACAGTAGTGA ATGAAATTCC GGTAGATAAA
AGTTTATTGA TTGGCACACT TACCGAACAG GCATCTAAAC ACAACCCGGC GTTGCAGGCA
GCCATCATAA ATAAACGTGT AGCGCAATTA GATCTGAGAA TTATAAAATC CTACCGATAC
CCCATTCTGA ATGTAAATAC CGGTTACAAT TTTACCAATT CAACATCTGC GCTCGGCTTC
GCAACCCAGA CTTCCGGTAA AGGCCTTACA TACGGGCTTA CAGCTACAGT TCCTATTTTC
AATGGTTTTA CACAGAACAT TGCTGAACAT AATTATAAAA TACTCATAAA TAGTGCAGAC
CTTAGGTATG AACAACTGAA TCAAACAATT ATATCAAACC TTACAAGCGC CTACCAAACC
TATAAGACAA GCTTGGTACT TGTTACATTG GAAGAACGGA ATCAACGGAT CGCAAAAGAG
AATTTAGACA TCACAATCGA AAAATTCCGT CTGGGAAGCA TTACAACCGT AGAATTCAGA
GCGGCACAAT TAAATTATAT CAATGCAACG GTACGTTACA GCACCGCTCA ATACAATGCA
AAGGTGGCTG AAGTAAGCTT AAATCAGATT TCAGGAACAA TGGAATATTA A
|
|---|
| Protein sequence | MKKYLVFTCS LLFLALLNQA AAQNILTLDE AIRITLENNY NIKLIANNLE ISRNNVNPGV
AGALPYVGGT LTNTNSVLDS RQVQANGTVT ERAGARNTGL NYGIGLNWTI FDGFGMFARY
DQLKELERLG EENLQVAVME NVAEVTKTYY YLVQQQQQLN AYDTAVFISQ QRVQFAQNRY
QVGKASKLEV LNAEVDMNTD TTNLVRQNEL YNNTQTSLNQ LMARDPGIRF TVVNEIPVDK
SLLIGTLTEQ ASKHNPALQA AIINKRVAQL DLRIIKSYRY PILNVNTGYN FTNSTSALGF
ATQTSGKGLT YGLTATVPIF NGFTQNIAEH NYKILINSAD LRYEQLNQTI ISNLTSAYQT
YKTSLVLVTL EERNQRIAKE NLDITIEKFR LGSITTVEFR AAQLNYINAT VRYSTAQYNA
KVAEVSLNQI SGTMEY
|
|---|
| |