| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2602 |
|---|
| Symbol | treC |
|---|
| ID | 4186146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 2976188 |
|---|
| End bp | 2978938 |
|---|
| Gene Length | 2751 bp |
|---|
| Protein Length | 916 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638072594 |
|---|
| Product | a-glycosidase, maltooligosyl trehalose synthase, glycoside hydrolase family 13 protein |
|---|
| Protein accession | YP_679197 |
|---|
| Protein GI | 110638988 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3280] Maltooligosyl trehalose synthase |
|---|
| TIGRFAM ID | [TIGR02401] malto-oligosyltrehalose synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAT TTGCAACAAC AATTTCCCCG GACTCATTTT TAAACATCGG TTCGGTAAGC
CCGGTTTATT TCCCTGCATC AACGTATCGG GTTCAGCTAA ATCATACGTT TACGTTTAAA
GATCTGCAGG CACAGATTCC GTATTTAAGC CAGCTGGGCA TCTCAACGAT CTACGCAGCA
CCGATCACAA CATCCAGTAA AGACAGTGCG CACGGGTATG ATGTAACAGA TTTTACAGCG
ATCAATCCGC AGATCGGAAC ATTGGAACAG TTAAAAGAAT TATCCGCCGT TTTGAAACAA
CATAACATGA GCTGGGTACA GGATATTGTT CCGAATCATA TGTGTTTTTC AACTGAAAAT
ATCCGGTTAA TGGATGTGCT GGAAAGAGGA AATCATTCTT CTTATTACCG TTTTTTTGAT
ATCAACTGGG AACATCCGGA TTCACTCGGA AAGCTTATCA TTCCAACCTT AGGTACTGAT
ATAGATGCTG CTATTGAATC AGGCGACATA CACGTTGCTT TTACAGATAC CGGCTTTTCA
CTGATGTATT TTGAAACCGG GTATCCGATA TCCATAACGG CCTATCCTGT TTTAATTTCC
TTATTGGAGA ATAAACACAT ACATGAAGAT TTTGTGCGTG AAATTAAAAC TTATCTGGAT
CAGGCTGCTA CTGCTTCTTT TGAAGCATTT AAAAAATTCA AAACGGAATT TTCAGAAAAA
ATAAAAAACG ATGACAATTA CAGTCTAGAA GCAGAATGGC TTACAAAAAA ATGTAATAAA
GACAAACACA TTTTAAAAGC ACTTGTCCTT CAGCAATATT ATTCACTGGT ACATTGGAAA
ACATCCGATT CAAAAATGAA TTACCGTCGG TTCTTTACCA TCAATAATTT AATTTGCCTT
CGGATGGAAG AGGAATCTGT TTTCAATGAA TATCATTCTT TAACAGCGTA TTTATATAAA
GAAAATATTA TTCAGGGTGT GCGTGTAGAT CACATTGATG GATTGTATGA CCCCAAGCAA
TATCTGCAAA GGCTACGCAA TTTATTGGGC GAACACTGTT ATATTATTGC TGAAAAAATA
CTGGAATATA ATGAAGACTT CGCTAAAGAC TGGAATATAG AAGGTACCAG CGGCTATGAA
TTTCTATCTT TTACCAATCG TGTACTGACA GATCAGCAAG GGGCTGAAGA AATACGTTCT
GAATATTTTG ATTTTATTCA ACGGCATGAA CATTATGATG ATATGGTGTA TGAAAAGAAA
CATACGTTTT TATATGATCA TATGCAGGGA GAGCTGGATA ATTTAATGAC CTTGATCAAT
CAATTGCATG TGTTGCCTGC AGGTACAGAT CAAAAAGTTT TCAGAAAAAG CTTAGCTGTT
TTTATGGCTG CCTTCCCTAT TTACCGTATC TACCCGGATC GCCTGCCTTT AATTCCGGAG
GCATTTAAAA TTGTTGAAAC GGCATACAAT ATTGCTATAC AGCACGAACC TACACTTAAA
GCAACACTGC ATATAATTAA GAATCTGTTT GAATATGATG AAGAGCAGTG TGATCAGAAA
CTAACGTTCA TCAGAAAGCT TATGCAGTTT ACTGGCCCCT TAGCAGCAAA GGGCGTTGAA
GATACAACCT TTTATATATA CAACCCATTA ATTTCGCATA ATGAAGTTGG AGATGCACCT
TGTGAATTAG GGATCAGCAT TGACTCCTTT CATGATAAAA TGCTGAGCAG ACTTGCCAAT
AACCCATACT CACTGAATGC AACTTCTACA CATGATACCA AACGAGGTGA AGACGCGCGT
ATGCGTATCA ATGTATTATC TCATTTACAG ACCGAGTGGA AAGTTTTATT ACATCAATGG
CATCAGGAAA ACAATGGCTT CATTCAACAT ATCAATGATC AGCCTGCGCC TTCTTTAAAT
GATGAATATT TTATTTATCA ATCCTTGATC GGAGCTTTTC CTGAAAACAT GCTTGTTACA
GATGAGTTTA TTACCCGAAC AAAAAACTTT GTAGTAAAAG CACTTAAAGA AGCAAAAGTG
CACACAAATT ATACCCAAGC AAACGATACA TATGAGCATG CCTGCACGGA ATTCATAAGT
TCTGTATTAG ATTCCGGACA TGCATTTTTA AAAACGTTTG TTCCGTTTGT AGAAAAGGCG
ATAAAATATG GTGCTGCTTA TTCCCTTGCG CAAACCATTA TAAAAATTAC AGCACCTGGT
ATTCCAGACA TTTACCAGGG CAGCGAGCTG TGGGACATCA GCTACGTAGA TCCGGATAAC
AGAAGACCTG TAGATTATTC TTTTAGAAAG GATCTGTTAG CCAAAATACA ATCAATGGAA
AACGACCGTA CTAAGCTTCT TAACTTTATC AGTCAGAATC GTTTTATCGG AGCAGAAAAA
TTATTTGCAA CCTGGCAGTT ATTAGAACTA AGAAATGATC TCCAGGATGT CTTTCTATTC
GGTACGTATA CACCTGTTTC TGTTACATCG GAGACAGGTA AAAAGGTCAT AGCCTATGTA
CGCAGTTATC AAAACAAACA TGTGCTTGTA ATTATACCTG TAGGGTTCGA GGTAGCCGGC
GAAACATATT CTCAACGTTC CTGGAAGGAT ATGATCGCAC AGTTGCCGGA CGGATTACCG
GATAAATGGA TGAATGTATT TACAGCAGAA ACATACCCAA TACTGAAAAG TATTACTGTC
GCGGCTGCAT GTAAGACTTT CCCGGTTGCT GTTTTCAAAA GTGTACAGTA A
|
|---|
| Protein sequence | MNTFATTISP DSFLNIGSVS PVYFPASTYR VQLNHTFTFK DLQAQIPYLS QLGISTIYAA
PITTSSKDSA HGYDVTDFTA INPQIGTLEQ LKELSAVLKQ HNMSWVQDIV PNHMCFSTEN
IRLMDVLERG NHSSYYRFFD INWEHPDSLG KLIIPTLGTD IDAAIESGDI HVAFTDTGFS
LMYFETGYPI SITAYPVLIS LLENKHIHED FVREIKTYLD QAATASFEAF KKFKTEFSEK
IKNDDNYSLE AEWLTKKCNK DKHILKALVL QQYYSLVHWK TSDSKMNYRR FFTINNLICL
RMEEESVFNE YHSLTAYLYK ENIIQGVRVD HIDGLYDPKQ YLQRLRNLLG EHCYIIAEKI
LEYNEDFAKD WNIEGTSGYE FLSFTNRVLT DQQGAEEIRS EYFDFIQRHE HYDDMVYEKK
HTFLYDHMQG ELDNLMTLIN QLHVLPAGTD QKVFRKSLAV FMAAFPIYRI YPDRLPLIPE
AFKIVETAYN IAIQHEPTLK ATLHIIKNLF EYDEEQCDQK LTFIRKLMQF TGPLAAKGVE
DTTFYIYNPL ISHNEVGDAP CELGISIDSF HDKMLSRLAN NPYSLNATST HDTKRGEDAR
MRINVLSHLQ TEWKVLLHQW HQENNGFIQH INDQPAPSLN DEYFIYQSLI GAFPENMLVT
DEFITRTKNF VVKALKEAKV HTNYTQANDT YEHACTEFIS SVLDSGHAFL KTFVPFVEKA
IKYGAAYSLA QTIIKITAPG IPDIYQGSEL WDISYVDPDN RRPVDYSFRK DLLAKIQSME
NDRTKLLNFI SQNRFIGAEK LFATWQLLEL RNDLQDVFLF GTYTPVSVTS ETGKKVIAYV
RSYQNKHVLV IIPVGFEVAG ETYSQRSWKD MIAQLPDGLP DKWMNVFTAE TYPILKSITV
AAACKTFPVA VFKSVQ
|
|---|
| |