Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2399 |
Symbol | |
ID | 4183829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 2757718 |
End bp | 2761938 |
Gene Length | 4221 bp |
Protein Length | 1406 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638072394 |
Product | hypothetical protein |
Protein accession | YP_678997 |
Protein GI | 110638788 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTTCTT TTCAGGATTA TCCGATTAAT GATCCGATCC AGGCCGTTGA TGACCTCATG AACAAACAGG GCTATACCGG AAACGGACAA TTGGGCTCTG TACGTGATTA CTTTTACACG CAAACAAGCG GTAAGGTAGT AATTACAAGT ACAATAGTTA AAGTCACGGT GGCTCACACA CGTGCGTATT ACGACGACAA CAATGTAAAT TATGTAGATG AAGCTATTGA TTTAATAAAT CAAAATTATC CGGCAGGTTT TCAGGATTTA ACAGCCGATC CGTTTGATGG AAAGCTCATG CATTTAAATT TTATAGCACG ATCACCCGGA CATTCATCAA CCGTTGGTGC AAGTGCCGGC AAATTTTTTA AGAACAATAC TACCGGCCAG CTTGAGATCG TTGGAGGAAA CATGACCTAT TTCAATGTAG ATGACCCTTT GATCATCAAT GTTATTTGCC ATGAAATGGG ACATAGTGTA ATGAGCTGGA CAGATTATTA CAGAACTGCA TATTCAAACC TGGGAAATTT TTGTGTGATG GGATCTGCCG GAACAGCTGT TGCACCTATG CCCATCAATC CTGCATTGCG TATGCAGCGT GGCTGGATCG ACAACATTAT TCCGGTTTCC GGAACAACTA CACAGACGTA TACGCTTACA GCCAACAGCT ACACAACGAT CCACAAATAC ACGAATCCAA ACAACCCAAA GGAATATTTA TTATTCCACG CCTTTAAACA TGGTGGTTAT TATCAACCCG TAGTAGGCGG GCCTATGCCT GAAGGATTGG CTATCTGGTA TGTAGACGAA GAAACCGGTT ATGATTCTCC TTTAAATCCC AATCACGACA ACCAGTATTA TATCCGGCTG GTGCAGGCAG ATAACAAAGA CGAAATGCAT GATGAATTCT TAGTGCCTGC AGATGTACGG GGAGATATGG AAGATCTTTA TGGAAATGCA AACAAATCAT TTCCTAATGG TACACCGTTC AGATGGAAAG ACGGTGGCGA GTTCGGCATT AATATTACGA ACATTTCCAG TCCAGGTGCT ACGATGCAGT TTACTGTAAC GGCAAGACCA AACACAGTAG TTTCAAGTTC AGATATATTT GGTACGATAG CACCCAAAGG AACATTAGGA GTTGCCAGCG GACAAACAAA AACATTCAGC CTTACACCGA ATCCGGGATA TGAAGTGAAT GTTTTAAAAG TAGATAATGC AACCGTTACA GCTGCCAATC CATACACAAT GTCAGGTATC TCTGGCACGA AAACAATTTC AGTTACATAC AAAAGAAAAA CAACTCAAAC GGCATTGCCT TCTCCATGGC AAAAGGCGAC AATAGGAAGT GTAAGCAGTT CAGATTTTGT AGCACATTCA GGTACAAATT TTTATATGGA AACGTACGGA AACACCGTTG GTGGTTCGGG TGATAATTTC ACATTTACTT ATCAGCTTTT GAATGGTGAC GGAACATACA TTGCACACCT TGGAAACTAC AATACTCTTG AAAGCCAACG AACAGGTATC ATGATCCGGG AATCTTTACA ACCGGATGCA GCATTTTCTG CAATCGCAAA AATAGATATG GGTGGTGCTA TTGTACAGCA AAGAGCATCT TCAGGAGGTT TAACACAAGA CAACCCGAAT GATCAAAAAA ATTTACACAT ATATGAATTG CACAATTGGT TAAAGATTGT GAGAAGCGGA AATGTAATCG TAAGTTCTGT ATCAAAGGAT GGAGTAACGT GGTATGAAAT CGGAAACCAA AACATCTCAA TGGCTTCTCA GGTATATGTA GGATTATTTA CAAAAGGAAC CGGATACACC ACATATCCTG CACAGGCTTT ATTTGATACA ATTTCTTTCA CATCAAGTCC GTTCCCAACA GTGCATATAA CCTCTCCGGC AACTGGTACA GTACTTTCTT CGAATTCAGT AACCATCAAT GCTACAGCTG CGCCAGCTGC AGCAAACGGT TCTATTACCA AAGTAGATTT CTATGACAAT ACTACGTTGA TCGGAACGGA TAATACTGCT CCTTACAGCT TTGTATGGAA TAATGTTAGT GGCGGCATAC ATGCGCTGAT AGCAAAAGCT ACAGACAATA CAGGAAAAGT TGCTGTTTCT GCTAAAGTAG CAATTGTTGC ACCTTGTACT GCTGCAGGTT CAAAATTACA GGGTACGGTA ATTGGCACCC CTGGTTCATG GAACGGATCA GGAAATACAC GCGAAAAAGC ATTTGACGGA AATATCAACA CGTACTTTGA TGCATCGGTA GACGTAGCAT GGACGGGGTT AGATCTTTCT GCTACCTATA AAGTTACCAC TATCCGTTAT GTACCAAGAG CTGGTCTGGA AGGCCGTATG ATTGGCGGAA AATTCCAGGG TAGTAATGCT GAAGATTTCA GTACGTATAC AGATTTAGCT ACAGTAGTTG CAAAGCCATC ATTTACCTGG AACTGCTTTG ATGTTTCCAG CACAGCATCT TTCAAATACC TGCGTTACAT AGGGCCTGAA GGTGGTGTCG GAAACATTGC CGAAATCGAG TTTTACGGAA CACCACAAGC GGCGAATCAG CTGCCAACGG TAGTAATTAC AAGTCCTGAA AATGGCAATA CCTTTACATC TCCTGCAACA ATTACCATCC ATGCAAATGC TGCTGATGCA GATGGCTCTA TTGTAAAAGT AGAATTTTAT TCAGGCGTTA ATTATCTGAA CAGAGATACG GTTGCTCCCT ATTCCACAAC CATTTCAAAC CTGCCGTCAG GCGTATACAG CTTCACTGCA CGGGCATATG ACAATCTGGG CGCAACATCT GAATATACAG TAACAAATAT TACTGTTGGT ACCAATACGG CACCTGTTGT AAGCATTACC AGTCCGGTTA CAAACCAGAG TTTTTCTGCT CCTGCAACAA TTGTAATCAA TACGGATGTA ACCGATGCAG AAGGTAATAT CTGGAAGGTT GAATTCTATA ACGGTTCTAC CTGGCTTGGG AGTGATTTCA CTGCTCCGTA TTCGTATACC TGGAGCAATG TACCGGCTGG AGTATACAAC ATTACGGCAC TGGCAATTGA CAACCTGGGC GCATCTGCTT CATCTACAAG AAACAATATT GCGGTAGTTG GCAATACTGC ACCAACGGTA AGCATTACCA GTCCGGTTAC AAATCAGAGT TATACTGCAC CTGCAACCAT CTATATTGAT GTTACAGCAA CAGATGCCGA TGGTTCAATC ACGAAGGTAG ATTTCTATAA CGGTTCTACA CTGTTAGGAT CTGATCTTAC TGCTCCCTAT ACCTTTACAT GGAGTAATGT ACCTGCAGGT GTATATAACA TCACGGCACT GGCAATCGAC AACCTGGGTG CTTCTGCATC TTCTACAAGA AACAACATTG CCGTAATTGC AAATCAGGCA CCTACCGTGA GCATTACAAG TCCGCTTACA AATGCAAGCT ATACGGCACC CGCTACGATT ATTATCAATG CAACAGCAGC GGACGCGGAC GGATCAATCT GGAAAGTTGA GTTCTACAAC GGATCTACGT GGTTGGGAAG TGATTTCACT GCTCCGTATT CGTATACATG GAACAATGTA CCTGCAGGTG TTTACAACAT CACTGCACTT GCAATTGACA ACCTGAATGC TACTGCTTCT TCTACCAGAA ATAATATTGC CGTAACAGCT CCTGCAGCGG ATATCACAGG TCCTGCCTGT GCGGGTAACA ATACAACGAT TACCTACGAA CTGGCTGCTT CAAAAAGAGT AAACGCAACG AGTTATGGCT GGTATTTTAC AGGATCAACC CAGAGCTTCA CGCCATCAGC AACTACGCAG TACCAGGCTA CGTTGGTTAC AGGCAATAAC TACGGCCAGG GTCAGTTGTG TGTAGGTGTT GGTTACGCAT CTGCTCCATA CCATACTACA TATTGCATTA CCTTACCTAA ATGCGCAACT TCAAGAGAAG CAAGTTTTGA AGAATCAGAA TCTCTGACGC TTCAACCGGT AGGTTTCCCA AATCCTTTTG CATCAGAGAC TACGATAAAC CTTGCCGCAC CGGACAGCAA AATAGAGGTA TATAACGCAA ATGGTATATT AGTGGAAGAA ACAATTGCCA GCGGATCATT CACCTTTGGT CAGCATCTGG CATCCGGTAT CTACTTTGTT AAAGTCACTA CAGGTAACAA AACCGAAACG TTAAAAGTAG TGAAAGAATA A
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Protein sequence | MLSFQDYPIN DPIQAVDDLM NKQGYTGNGQ LGSVRDYFYT QTSGKVVITS TIVKVTVAHT RAYYDDNNVN YVDEAIDLIN QNYPAGFQDL TADPFDGKLM HLNFIARSPG HSSTVGASAG KFFKNNTTGQ LEIVGGNMTY FNVDDPLIIN VICHEMGHSV MSWTDYYRTA YSNLGNFCVM GSAGTAVAPM PINPALRMQR GWIDNIIPVS GTTTQTYTLT ANSYTTIHKY TNPNNPKEYL LFHAFKHGGY YQPVVGGPMP EGLAIWYVDE ETGYDSPLNP NHDNQYYIRL VQADNKDEMH DEFLVPADVR GDMEDLYGNA NKSFPNGTPF RWKDGGEFGI NITNISSPGA TMQFTVTARP NTVVSSSDIF GTIAPKGTLG VASGQTKTFS LTPNPGYEVN VLKVDNATVT AANPYTMSGI SGTKTISVTY KRKTTQTALP SPWQKATIGS VSSSDFVAHS GTNFYMETYG NTVGGSGDNF TFTYQLLNGD GTYIAHLGNY NTLESQRTGI MIRESLQPDA AFSAIAKIDM GGAIVQQRAS SGGLTQDNPN DQKNLHIYEL HNWLKIVRSG NVIVSSVSKD GVTWYEIGNQ NISMASQVYV GLFTKGTGYT TYPAQALFDT ISFTSSPFPT VHITSPATGT VLSSNSVTIN ATAAPAAANG SITKVDFYDN TTLIGTDNTA PYSFVWNNVS GGIHALIAKA TDNTGKVAVS AKVAIVAPCT AAGSKLQGTV IGTPGSWNGS GNTREKAFDG NINTYFDASV DVAWTGLDLS ATYKVTTIRY VPRAGLEGRM IGGKFQGSNA EDFSTYTDLA TVVAKPSFTW NCFDVSSTAS FKYLRYIGPE GGVGNIAEIE FYGTPQAANQ LPTVVITSPE NGNTFTSPAT ITIHANAADA DGSIVKVEFY SGVNYLNRDT VAPYSTTISN LPSGVYSFTA RAYDNLGATS EYTVTNITVG TNTAPVVSIT SPVTNQSFSA PATIVINTDV TDAEGNIWKV EFYNGSTWLG SDFTAPYSYT WSNVPAGVYN ITALAIDNLG ASASSTRNNI AVVGNTAPTV SITSPVTNQS YTAPATIYID VTATDADGSI TKVDFYNGST LLGSDLTAPY TFTWSNVPAG VYNITALAID NLGASASSTR NNIAVIANQA PTVSITSPLT NASYTAPATI IINATAADAD GSIWKVEFYN GSTWLGSDFT APYSYTWNNV PAGVYNITAL AIDNLNATAS STRNNIAVTA PAADITGPAC AGNNTTITYE LAASKRVNAT SYGWYFTGST QSFTPSATTQ YQATLVTGNN YGQGQLCVGV GYASAPYHTT YCITLPKCAT SREASFEESE SLTLQPVGFP NPFASETTIN LAAPDSKIEV YNANGILVEE TIASGSFTFG QHLASGIYFV KVTTGNKTET LKVVKE
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