Gene CHU_2016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_2016 
Symbol 
ID4184541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp2350270 
End bp2350797 
Gene Length528 bp 
Protein Length175 aa 
Translation table11 
GC content39% 
IMG OID638072019 
Producthypothetical protein 
Protein accessionYP_678624 
Protein GI110638415 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAAA TTAACACAGG CGGCGGCGGC GGTAAGGATG GTAAAAAAAG ATCCAAAAAA 
ATGTCTACGA AAGTAGATAT GACACCGATG GTGGATTTGG CTTTCCTTTT AATTACTTTC
TTCATGTTGG CTACCACTTT AACAAAGCAA CAGAAATTTG ATTTCGGGGT TCCTCCGGAT
GTAACAAATC CGGAAGATCA ACCGGAATTG AAAGCCAGTA ATGCAATCAC ACTGATCTTA
GGAAAAGATG ATGCTATATA CTGGTATACA ATGAATCAGG ATGGCAGCAC TGATTTTCAC
GAAACAGATT TCTCTGATGA CGGAATCCGT GCAACACTGA TCGAACGTAA GAAAGCCGTT
GGTGCAGACT TAAACGTTGT GATCAAACCG ATGAAAGATT CGAAATACAA AAATTTAATT
GATATTATTG ATGAGTTAGC CATACTGGGT ATTGGTAAAA AAGCTTTGGT TGAAGCAACT
CCCGATGATA TTAAATTGGT TCAGGCAGAA AACGCTTCAG TAAATTAA
 
Protein sequence
MAEINTGGGG GKDGKKRSKK MSTKVDMTPM VDLAFLLITF FMLATTLTKQ QKFDFGVPPD 
VTNPEDQPEL KASNAITLIL GKDDAIYWYT MNQDGSTDFH ETDFSDDGIR ATLIERKKAV
GADLNVVIKP MKDSKYKNLI DIIDELAILG IGKKALVEAT PDDIKLVQAE NASVN