| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1834 |
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| Symbol | |
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| ID | 4183878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 2153234 |
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| End bp | 2154079 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638071834 |
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| Product | ribosomal large subunit pseudouridine synthase F |
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| Protein accession | YP_678444 |
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| Protein GI | 110638234 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.954651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0468047 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCAG TAGTAAATGT ATGCCTCAAA GGTACGAAGA AAACCAGTAA TGCGAAATGC
CTTTACACAC TGAATGTATT AAAAGCAACT GATTTTCATA CCTTATCAGC TTGTTATTGT
AAGTATTTAA CAGGAACTTT AACGGCTGAA TCACCTACGC TCCCATACAC TTTTATGAAT
ATTAATGAAT TTCTCATAAA GCGGTTTCAT ATCTCAAAAG ATAAAGCCAG TAACATGGTG
CTTGAAAATC AGGTATTCAT TAACGGCGTA AAAGCGCTTC AACGGAACGA TGTATTAAAA
AGTGACCACA TTGTAGTGAA TGGCGAAGTA TTGCAGGAGG GCCGGAATTT TACGTATTAC
GCATATTATA AACCGCGCGG TATTGAGTGT ACGCTGAATG CAGCCATTGA AAACAATCTG
TTGCACACAC TTCCCTTCGG AGAGCATGTG TACCCGGTCG GCAGGCTGGA TAAAGAATCT
GAAGGTTTGC TGCTGCTCAC CAACGATGGT AAGCTCTATA AAGACATTGC GTTTTCTGAT
AATTTTAAGG AAAAAGAATA CCTGGTTGAA GTTGATAAAC CATTGACCGA TGAAGCTGTT
GAGCAACTAT CTTCAGGCAT TGTTATTATG GGCCAGAAAA CACGTCCGGC ACGTGTAAGC
ATGGTTACAG AACACTCGTT CCGCATTATT CTTACACAGG GCCTTAACAG GCAGATCCGA
AGAATGTGTT ACAAACTCCG GTATGAAGTA ACAATGCTCA AACGTATACG CATCACCTCA
ATTGAATTGG GCGATCTTAA ACCGGGAGCA TATAGAGTCC TTACCCGTGC AGAGATCTTT
GATTAA
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| Protein sequence | MISVVNVCLK GTKKTSNAKC LYTLNVLKAT DFHTLSACYC KYLTGTLTAE SPTLPYTFMN
INEFLIKRFH ISKDKASNMV LENQVFINGV KALQRNDVLK SDHIVVNGEV LQEGRNFTYY
AYYKPRGIEC TLNAAIENNL LHTLPFGEHV YPVGRLDKES EGLLLLTNDG KLYKDIAFSD
NFKEKEYLVE VDKPLTDEAV EQLSSGIVIM GQKTRPARVS MVTEHSFRII LTQGLNRQIR
RMCYKLRYEV TMLKRIRITS IELGDLKPGA YRVLTRAEIF D
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