Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1237 |
Symbol | |
ID | 4187027 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1428340 |
End bp | 1433196 |
Gene Length | 4857 bp |
Protein Length | 1618 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638071231 |
Product | chemotaxis response regulator (methyltransferase) |
Protein accession | YP_677849 |
Protein GI | 110637642 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins [COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATGGATA TAAAATCAGA CAATACACAT TACATAGTTG GTATCGGGGC TTCGGCAGGA GGTCTGGAAG CGTATAACGA TTTTTTTGAC AACGCGCCTG AAAACAGCCG GCTTTCGTAT ATTCTTGTAC AGCATTTATC ACCGGATTAT AAAAGTCTGC TGGTAGATCT GCTGTCGCGC CACACGCACA TGAAAATATA CGAGGCCAGG AATGAAATGG AGATCCGGCC GAATTGTATC TATGTTATTC CGCCGGGCAA AAATCTTACG GTAGGTGAAG ACAAGCTGAT CATCCATGAA AAGGACAGTC TGGATAAAGG CCCGAACACG TCTATTGATA CATTCTTTTA TTCCCTTGCC GATAAGTACG GCGACCGTGC CATTGCCATT GTATTGTCTG GCACCGGTAC CGATGGTTCC CGCGGGATAG AAGCCATTAA GGATGCCGAA GGGCTTGTGA TCGTGCAGGA CCCGCAGCTG GCTAAGTTTG ACGGCATGCC GCGCAGCAGC ATTGCAACCG GGCGTGCGGA CCTGATCCTG CCTACTTCGA AGATGCACGT AGAGATTATT AATTATATCA ATGAGCTGCC GGTTGTGAGC CTTATTGAAA ATGAGATCGA CCAGGGAGTG TTGAACAAAG TGCTGCATGT ATTGCATAAG CAGACAGGAT GTGATTTTCA GCAGTACAAG ATGCCGACAA TCCTTCGAAG GTTAACCCGC CGCCTGGCCT TCCTGAAAAT ATCTACCGTA GAAGATTATC TGCACTACAT CATAGAGCAT ACACAGGAAG GGAAAATATT TTGTAAGGAC CTGCTGATCG GTGTTACAAA GTTCTTCCGG GATAAAGAGG CATTTGACAG CCTGCGTGAA AAAGTGCTGA TTCCGCTGAT TGATTCAAAA CATGATTTTG AAACCATAAA AGTTTGGGTG AGTGCCTGCA GTACAGGAGA AGAGGTATAC TCCATTGCAA TCCTGCTGCA TGATCTTATC CAGCAGCGCA ACCGCAACCT GGAAGTAAAG ATTTTCGGCA CCGATCTGGA TGCTTCCCAT ATTGAAAAGG CTTCCAAAGC CGAATATCCG GAATTTATTA ATAAGGAAAT TCCGCTGGAA TACCTGAGCC GGTATTTCAC AAAAAGAGAT AATGTCTATA CAGTCATTCC TGAGATCCGC AAACAGATCG TATTTGCCCG GCATAATCTC ATTACCGATC CGCCGTTTAT TAAGAACGAC CTGGTAAGCT GCCGGAACAT GCTGATCTAT GTAAATAACC AGCTGCAGAA GATCATTTTA TCGAAGTTCA GTTTCGGGCT GAACAAGAAC GGCTACCTGT TCCTGGGGCC GAGTGAAAGT ATTTCTACCA ATAAGGATGC TTTTGTGGAG ATGGACCGCA AATGGAAACT GTACAGCAAA GCAGACACGG AAGGCAAGAG CACTTATCCA GGACGTTATG AAGACAGGTT TGCCTTTCAT ACGAATATTA AGAAAGGTAA AACCACTGCT GTCGGGATGG CTGAAAGCAA GGCTCTTTCA GAAGCCGTGC ACCAAACCAT TCTGGAAGAT TTTGCTGTGG TTGGTTTTTA TCTGGACCGG CATTATATTA TTCATGACAC GATCGGGAAC TATAAAAAAT ATCTGGTATT CCCGGAAGAA GGGTTGAAGT TCAATCTGCT GAAAATGCTT CCGGATGCGG TATCCATTCC GTTAAATACC GCCCTTATCA AAGCCTGGAA GAACAATGAA ACTGTTCTGC TCAATAATCT GCATTATGAA CTGAACGGTC AGTTCATCAG CCTGGTTATA AGTGTGCGTC CCGATAAAGA AGTGCAGGGT AACACACTGG TAATGTTCAA TTCAACCCCG CACATGTTCG ATATTGGCGA TAACAATGAG CACATGGAAG ATGGTCCGAA TAAGGAGCTG CTGACCAAAC TCAAGCGGGA ACTTAAGGAA AGCAAGTTTA ATCTGCAGAC AGCTATTGAA GAACTTGAAA CAACAAATGA AGAACTGCAG TCCAGCAATG AAGAACTGCT CTCATCCAAT GAAGAGCTGC AATCGAGCAA TGAAGAGCTG CAGTCTCTGA ATGAGGAACT GCACACATTA AATACCGAAC ATCAGCTCCG CATTCAGGAG CTGCTTGATC TCAACGACGA TCTGAATAAT TATTTCCGGT GCAGCGACAT CGGCCAGGTG ATCGTTGATA AAGACATGCT GATCCGGAAA TTCAACCCTG CCGCCGCAGG GCTTATTAAT ATCATAGAGA GTGATGTCTC ACGTTCCATT ACACACCTTA CGACCAATTT CCGGTACGAT AATTTTGAAC GCGATATCAA ACAGGCGCTG TTCGAGAACA AGATCATTGA AAAAGAACTG AATCTTGAAA ACGGTGTAAC GCTTCTTGTA CGGATCTATT CCTATATCCG CAAGAACAAT ATCATTGACG GTGCGCTCAT CAGCTTTATT GATATCAGCG GATTTAAGAA GCTGAACAGT ATTATCAATG GTGTATTCGA TTCAAGCAAG AGTTCTATTC TTGCGCTTAG TGCATCCAGA AACAGGTCGG GAGAAATCTC TGAACTGTTC AGCATTACTT CCAATTCAGT TGCCAATGAG CTGTTCGGGA AAAATCTTTC GGAAGAGCAC GTGCCGTTTT CTGCTGTAAG CATGCATTTG TATGAGCTGA TCTACAAAGA TCTGGTGCGT GTGGTTGAAA CCGGGAACAG TTTTGTAACC GAGCTGGGTT TAAACGATAA ATGGTTTGAT GTGTCTGCTG TAAAGATGAT GGACGGGCTT GCGCTTACAC TGAATGATAT CAGTGACCGC AAGATGATGG AAGACCAGCT GCGTAAAAGT TATGGTGAAC TCTTTGCCGC AAAAGAAAAT CTGAAGACAC TTAATTACAA TCTGGAAACA CGTGTCGCTG AACGCACACG TGAGCTTGCT ACGAGCGAAG AACGTTTTCG TCTGGTATCA ACCGTTACAA ACGATGTGGT GGTAGACTGG AACTTTATGA ATAATTCGAT CTGGCTGAGT GATAATTATG AACGCCTTCT GGGATATAAA AAAGATACGT TTGAACTTAC ACGTAAATTC TGGCTCAGTA ACATTCATCC GGAAGACCGC GACCGGATCA ATAAGGCCGT TAATGCCTAT ATCAATACAT CCCAAACACA CTGGGAACTT GAATACAGGT ATCAGCATGC AGACGGCAGC TATAAGCTGA TCAATGACAG AGGCTATCTG ATGCTGGATG AACACGGAAC GCCGTACCGC ATGCTGAGCT CGATGCTGGA CATCACGGAG ATACGCGATA CCAAAAAAGA TCTGAAGGAA AGTGAGATGC GTCTTAGCCT GGCGCTGGAC GCGTCTAATA TGGCGGCATG GCACATTGAT ATGGATACCA GACACATTGC TTATTCAGAC ACGCTTGCCG TTATATTCGG GTACCCGAAA GATACAACTC TGGTATGGAG TGATCTTGTT GCGCAGATTT ATCCGGAAGA TATGCATTTA TATCAGACAG CCAGACAGCA AATGGAAACT ACAGGACTGT ATGAATATGA AATACGTATT GTATGGCCCG ATAACAGCAT CAAATGGATT AAAACCATTG GTAAGATGTT GCTTGATTCA GATGGCAGTC AGCGGCGTAT GATCGGTATC ACACGCGATA TTACTAAAGA TAAAGAGGCA TCTCTGCAGC TGGAACAAAT GGTTGTAAAG CGTACCGCTG AATTGCGCAA AAAGAATGAA GATCTTTCCC AGCAGAATGA GTTTATTGAA ACCATCTTTG ATGCTTCTGT AAATTCGATT GCGGTTGTTA ATAAGGATCT GGTAATTACT TCTGTAAATA AAGCCTGTGA AGATATCTTC CTGATCAGAC GTGAAGCGGC GATCGGTCAG AAATATACCG ATGTGTTCAG TCAGTCTGAG GCCGTATTTG ATTATGAAAA TATTCTGAGC GTATTCTCCG GACAAAGCCT GCACAACAGT GTACTGATCA ACCGCGGCCC GGAGACTAAG TATCTGGACA ATTATTTTAT CCCGCTTGCA TATAACAATA TGGTTTACGG CGCATTGATC ATTTCGCATG ACATTACCGA GATCAATGCC GCCAACCAGA AGCTGAGCCA GATCAATAAT CAGCTTATAA AATCCAACAG CGATCTGGAA CAGTTTGCCT ATATAGCGAG TCATGATCTG CAGGAACCGT TGCGGAAAAT CCGTGTCTTT ATTTCGCTGC TAAATCAGAA GCGGGCAAAA GATGATGTAG ATACGTATCT GCAGAAGATC GCAGCATCAG CCGAGCGGAT GTCATCGCTG ATAAAAAATG TTCTGGATTT TTCGCGCTTG TCTTATGACC ATAACGCGAT GACAGATATA GACCTGAACA GTACGATCAG TTATCTGCTG GTTGATTTTG AACTGATCAT AAAAGAAAAG GGTGCTGTGG TTCATGTCGG GAAGCTGCCG CACATCAACG GTATTGCGCA TCAGATCAGT CAGCTTTTTT CAAATCTGCT GAGTAATTCA CTAAAGTTCT GCGTGCAGAA ACCATTGATA TCCATTGAGG CAATACAGCT TACAAATAAA CAGGTACGGA CATTTGAACA GCTTGATCCT TCACGGAAAT ATATTGTTAT TTCTTTTAAA GATAATGGGA TCGGGTTTGA ACAGAAGTAT GCAGATAAGA TATTCGGTTT CTTTTACCGC ATGGCGCAAA CAGAAATAAA TTACAAAGGC AATGGAATCG GTCTGGCACT TTGTAAAAAG ATTGTTGAGA ACCATGGCGG GCTTATTAAC GTGGAGTCTG AGATCGATAA AGGAACAACA TTCAGGATCA TTCTTCCGTT ATTTTAG
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Protein sequence | MMDIKSDNTH YIVGIGASAG GLEAYNDFFD NAPENSRLSY ILVQHLSPDY KSLLVDLLSR HTHMKIYEAR NEMEIRPNCI YVIPPGKNLT VGEDKLIIHE KDSLDKGPNT SIDTFFYSLA DKYGDRAIAI VLSGTGTDGS RGIEAIKDAE GLVIVQDPQL AKFDGMPRSS IATGRADLIL PTSKMHVEII NYINELPVVS LIENEIDQGV LNKVLHVLHK QTGCDFQQYK MPTILRRLTR RLAFLKISTV EDYLHYIIEH TQEGKIFCKD LLIGVTKFFR DKEAFDSLRE KVLIPLIDSK HDFETIKVWV SACSTGEEVY SIAILLHDLI QQRNRNLEVK IFGTDLDASH IEKASKAEYP EFINKEIPLE YLSRYFTKRD NVYTVIPEIR KQIVFARHNL ITDPPFIKND LVSCRNMLIY VNNQLQKIIL SKFSFGLNKN GYLFLGPSES ISTNKDAFVE MDRKWKLYSK ADTEGKSTYP GRYEDRFAFH TNIKKGKTTA VGMAESKALS EAVHQTILED FAVVGFYLDR HYIIHDTIGN YKKYLVFPEE GLKFNLLKML PDAVSIPLNT ALIKAWKNNE TVLLNNLHYE LNGQFISLVI SVRPDKEVQG NTLVMFNSTP HMFDIGDNNE HMEDGPNKEL LTKLKRELKE SKFNLQTAIE ELETTNEELQ SSNEELLSSN EELQSSNEEL QSLNEELHTL NTEHQLRIQE LLDLNDDLNN YFRCSDIGQV IVDKDMLIRK FNPAAAGLIN IIESDVSRSI THLTTNFRYD NFERDIKQAL FENKIIEKEL NLENGVTLLV RIYSYIRKNN IIDGALISFI DISGFKKLNS IINGVFDSSK SSILALSASR NRSGEISELF SITSNSVANE LFGKNLSEEH VPFSAVSMHL YELIYKDLVR VVETGNSFVT ELGLNDKWFD VSAVKMMDGL ALTLNDISDR KMMEDQLRKS YGELFAAKEN LKTLNYNLET RVAERTRELA TSEERFRLVS TVTNDVVVDW NFMNNSIWLS DNYERLLGYK KDTFELTRKF WLSNIHPEDR DRINKAVNAY INTSQTHWEL EYRYQHADGS YKLINDRGYL MLDEHGTPYR MLSSMLDITE IRDTKKDLKE SEMRLSLALD ASNMAAWHID MDTRHIAYSD TLAVIFGYPK DTTLVWSDLV AQIYPEDMHL YQTARQQMET TGLYEYEIRI VWPDNSIKWI KTIGKMLLDS DGSQRRMIGI TRDITKDKEA SLQLEQMVVK RTAELRKKNE DLSQQNEFIE TIFDASVNSI AVVNKDLVIT SVNKACEDIF LIRREAAIGQ KYTDVFSQSE AVFDYENILS VFSGQSLHNS VLINRGPETK YLDNYFIPLA YNNMVYGALI ISHDITEINA ANQKLSQINN QLIKSNSDLE QFAYIASHDL QEPLRKIRVF ISLLNQKRAK DDVDTYLQKI AASAERMSSL IKNVLDFSRL SYDHNAMTDI DLNSTISYLL VDFELIIKEK GAVVHVGKLP HINGIAHQIS QLFSNLLSNS LKFCVQKPLI SIEAIQLTNK QVRTFEQLDP SRKYIVISFK DNGIGFEQKY ADKIFGFFYR MAQTEINYKG NGIGLALCKK IVENHGGLIN VESEIDKGTT FRIILPLF
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