Gene CHU_1110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1110 
Symbol 
ID4186486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1288327 
End bp1288830 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content40% 
IMG OID638071108 
Producthypothetical protein 
Protein accessionYP_677726 
Protein GI110637519 
COG category[S] Function unknown 
COG ID[COG3832] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.000475267 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACAG ATTTAGCCCT TGATTTTTCT GTCAATAAGG AAAACAAGAC CATTACAATT 
AAAAGAGAAT TTGCAGCAGT ACGTGCAATC GTTTGGGAAG CGTTTACAAG AGCAGAAATA
CTGGATCAGT GGTGGGCGCC AAAACCATGG AAAGCTAAAA CAAAATCAAT GGATTTTAAA
GAAGGTGGTA CGTGGCTATA TGCTATGGTT GGCCCGAATG GCGAAGAACA CTGGTCTATT
TGTGAATATG CAATCATTAA ACCGATAGAA CGTTTTACCG GTAAGGATGG ATTTACGGAT
GCAAGCGGAA AGCTTAATAC TGAGATGCCG CGATCAAACT GGGATATGCG TTTTATTGAC
AAAGGTGAGA TCACCGAAGT GCAATATCAC ATTTCCTATG ACGATGTAGC ACAGCTGGAA
GCTACTATAC AAATGGGCTT CAAAGAAGGT ATTACCATGG CTATGGAAAA CCTGGATGAA
TTACTGGTAT CGGGTAAAAA ATAA
 
Protein sequence
MRTDLALDFS VNKENKTITI KREFAAVRAI VWEAFTRAEI LDQWWAPKPW KAKTKSMDFK 
EGGTWLYAMV GPNGEEHWSI CEYAIIKPIE RFTGKDGFTD ASGKLNTEMP RSNWDMRFID
KGEITEVQYH ISYDDVAQLE ATIQMGFKEG ITMAMENLDE LLVSGKK