Gene CHU_0409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0409 
Symbol 
ID4184243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp476961 
End bp479516 
Gene Length2556 bp 
Protein Length851 aa 
Translation table11 
GC content38% 
IMG OID638070417 
ProductTPR repeat-containing protein 
Protein accessionYP_677039 
Protein GI110636832 
COG category[S] Function unknown 
COG ID[COG4995] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.613133 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTC CTTTTATTTC ACGGATTATA CTCTTTCTAT TTATCAGTAT CAACCTGCTT 
ACACATCAGC TACGTGCCCA GGATACTACA AGCTGCTTTA CACATTCGAT GAATGTATAC
AAAACAGGAA ATTATCCGGA TGCGTATAAA AATTTTTCTG CTTGTTTAAA AAATATAGAA
GATAAAAAAT CTGAAGCATA CACCAGCTGC ATTTTATATA TGGGTATATG TGCGTTGGAA
AATGCTGCAT ACAAAAATGC ATCCACTCTT TTACATCTTG CGGAACAGTC TTTTACTCCA
TCTTCAGAAT ATTATGCAAT CTGCCAGCAA AATTTAGCAG CCTTAAGTAA ACGACAGGGA
AAATATAATG AAGCTGAAGC TATCCTCATT AAGCTTCTTG AAATACAGGA AAATTCAGCG
AGTATCCCTT GCGCATCAAA AGCAATAACA CTAAATGATC TCGGTGTTAT CTACAAAAGA
CTTGGTCAAT ATGAGCGGTC CATTATGTAT TTTTCTGAAA GCCTCCGACT CAAACAATCC
TGTTTAGACC CCGAAGACCC TTCTATTACC ATTAGTCTGA ATAACCTGGC TGGGGTGTAC
ATGAAACAAA AAGACTACAT GCGGGCCGAC AGCTTATACA CCGCAGCTAT AAAAATTAAA
ATTAAACGAT ACGGACCAAA TCACCCGAGC ACGTTACTTG CCCGGAATAA TTTAGCCGAA
CTTTACAGGC AGCAAAATAA TTATGCAGCT GCACTAAATA TTCTCCAGGA CGTACGTGAG
CGGAAAGCTT CAAGTATTGG TAAGCGGACC TTGTCTTATG CCACAACGCT GCATACAATA
GCGAATGTTT ATTTTGCTTC CGGAAATTTT TCTGAAGCCT TAACCTATTG TAATGCATCT
ATTACGATTA AAGAAAAACT TCTTGGAAAA ACCGGCTTAA GTACGTTGCA TGGTTACCTG
CTGCTTGCAA AAATAAATCA TGCTACAGGT AAAAACCAGG AAGCAAGATC CATGTATGAT
TTTATTTTAA ACACAAAAAA AGAAGAAATT GATGCGTACT TTAAATATCT GGGAGAAGAA
GAAAAAATTC AATACGTAAA AGCCCACACA GCTTACTGGA AAGAGTTTAC AACCTTTGTA
TTTGATATGA TGCACGCGGA TTCTTCCAGC CATTCTGAAT CAAACAAAAT ATTATTCAAC
CAATGGATTG AGAACCGTTG GTATGTATCT GAACTTATAC TGGAAGAAAC ACAACGGCAG
CACAGGATTT GGGAAAACAT ACATGACAGC GCGCAGGCAA GTATGGTAGA GGAATTAAAA
GAATTAAAAG ACGCCATTGC AAAAATATAT TTATTAAAAT CGAAAGATGA TACAGAAACA
TCCGCAGAAT TAAATACACT AACGGATCGT GCTACCCGCA TTGAAAAAAA ACTCACGAGC
ATATCTTCCG TTGAAAAACG CAAATATCAT TCAGTAGCTG ACATTACTGC CGCATTGGAA
GCAACCGAAT GCATTGTCGA AATCATAAAA CCACTACAGC CAACGGGCAA CTATCTGGCA
TTAGTATACC TGAAAGAAGC TGATACACCT CATAAAATAT GGCTACCAGC AGCAAGTATG
TTAGATGGTA AAGCATATGC GTATTACAAA AATGCGATCC AGTTTAAAAT TCAGGATACA
AAAAATTTAG TCCTGTATTG GCAGCCGATT GAAAACTTTA TATCTCAACA TAGCGCTATC
CGAACCGTGT ATCTGGTACG TGACGGTATC TACGAATGTA TGAATATACA TACTCTTTTA
GCGGATGCGG ATAAAAAAAC AACTTCACTT ATTTACCTGA ATAAGACAGA GAATATTCTT
TCCTATAAAC AGCGTGCTTC GACTATTTTA TTACATACAT CTGTATTTAT TTATCATCCG
CTTTACGGTG CAACGGATAC AGATTGTGTC TATTCAGATT TGCCCGGAAC GAAAAAAGAA
GTTGATGCCA TTGAACCATT ATTCAGGAAA AAAGCTCTTG AAACAATTCG TTATAGCGAA
AAAACGGCAA CCGAAACAAC TATAAAAAAT GACACCGCTG TTTATTCTAT TATGCATATT
GCCACGCACG GATATTTAGA AATAACTCCG GAAGATGATT ACCTGGAATC CATGATTCAT
TCCGGATTAG TGCTCAGCGG GGTGTGTGAT ATTTCGTTCT TGGATGCTTC AATGAATGAT
GATGGCATAT TAACGTCGTA TGAAATTGCT CAGTTAAATT TAAGTGCTAC AGAACTGGTT
GTGTTGTCAG CGTGTCAAAG CGGTTTAGGT ACACTTGATA ACCAGGAAGG CATACTTGGC
TTGCAAAGAG GCTTGCTGGT AGCCGGAGCC AAAAAAGTAC TGGTTTCGCT TTGGAAAATT
GATGATGCCA TTACTGCCGA GTGGATGTAT CATTTTTACT CGGATTTACT TGAACACAAA
TCCTGTTCGG AAGCCTATCT GTTTGCTCAG CAACGAATAA AAGCACGTTA TCCTGAGCCG
TATTATTGGG GTGCTTTTGT CTTACTGGAA CAATAA
 
Protein sequence
MKSPFISRII LFLFISINLL THQLRAQDTT SCFTHSMNVY KTGNYPDAYK NFSACLKNIE 
DKKSEAYTSC ILYMGICALE NAAYKNASTL LHLAEQSFTP SSEYYAICQQ NLAALSKRQG
KYNEAEAILI KLLEIQENSA SIPCASKAIT LNDLGVIYKR LGQYERSIMY FSESLRLKQS
CLDPEDPSIT ISLNNLAGVY MKQKDYMRAD SLYTAAIKIK IKRYGPNHPS TLLARNNLAE
LYRQQNNYAA ALNILQDVRE RKASSIGKRT LSYATTLHTI ANVYFASGNF SEALTYCNAS
ITIKEKLLGK TGLSTLHGYL LLAKINHATG KNQEARSMYD FILNTKKEEI DAYFKYLGEE
EKIQYVKAHT AYWKEFTTFV FDMMHADSSS HSESNKILFN QWIENRWYVS ELILEETQRQ
HRIWENIHDS AQASMVEELK ELKDAIAKIY LLKSKDDTET SAELNTLTDR ATRIEKKLTS
ISSVEKRKYH SVADITAALE ATECIVEIIK PLQPTGNYLA LVYLKEADTP HKIWLPAASM
LDGKAYAYYK NAIQFKIQDT KNLVLYWQPI ENFISQHSAI RTVYLVRDGI YECMNIHTLL
ADADKKTTSL IYLNKTENIL SYKQRASTIL LHTSVFIYHP LYGATDTDCV YSDLPGTKKE
VDAIEPLFRK KALETIRYSE KTATETTIKN DTAVYSIMHI ATHGYLEITP EDDYLESMIH
SGLVLSGVCD ISFLDASMND DGILTSYEIA QLNLSATELV VLSACQSGLG TLDNQEGILG
LQRGLLVAGA KKVLVSLWKI DDAITAEWMY HFYSDLLEHK SCSEAYLFAQ QRIKARYPEP
YYWGAFVLLE Q