Gene CHU_0283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0283 
Symbol 
ID4185759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp341520 
End bp344084 
Gene Length2565 bp 
Protein Length854 aa 
Translation table11 
GC content40% 
IMG OID638070292 
ProductTPR repeat-containing protein 
Protein accessionYP_676914 
Protein GI110636707 
COG category[S] Function unknown 
COG ID[COG4995] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATGCTG TAGAAGCAGA TCTGCATAAA GATATCGAAC CTGTAGCATA TTATTTATAC 
TGTGAGACTC AACGCGCAGA ATGTGCGATT CGCCTCAGTG ATCTGGACGA AGCGCAAGCA
ATTGTGCAAG CAGCATTGAA GCAGTGTCCG GCGGCACTGG TTAATTCCAA AGCGTTGCTT
CAAAATGCAC AGGCAAAAAT CTATTACCAG AAAGGATTAC TGGATCAGGC GCATGCAGAA
ATTATGTCTG CCATTGAATT ACTTAAAGGC GGCACTTCTT TTTATTGGAG ATCACCCTTA
TCTGAATGTT ATAATACAGA AGGATTGATT GATTGGCTCC GCGGTAACGA TGAAAAATCG
CTGGAGTATT TAAACCAGGC ACTCGAAATA CGAAAAGAAT TGTTTGGTGA ACATACCGCA
CAGGTGGCAG CCGTTTATAA TAACATGGGG CTGGTCTACT CCGGTATTGA TTCAGATGAA
GCAGTATTCT ATTATGAAAA TGCACTTGAA ATTTATCAAT CGATCTATCC GGAAAATCAT
CCGGCCCTTG CTGTTGCGTA CAGCAACCTC GCACAGATCT ACCGCAAACA GGAGGCATAT
AATACTGCAC TGACACAATA TGAAAAAGCT CTGGAAATAT GGGAGCAGCG TTACCCCGGT
ATGCACCCAA ATAAAGCTTT TGTGTATTCG GGTATGGCAC AAGTGTATGA AGACAAAGGT
GCGTATGACC AGGCATTAAC GCAGGCGAAA AAAGCATTGG AAATATATAA ACAGGAATAT
GGAAGACATC CGAATACTGC TGCGTGTTTT ACATTGATCG GTTCAATTTT TACCGGTCAG
CGGGAGTATA CCAAAGCGAT ACATGCATTT CAATTAGCAC TCATGTATAA CACCGCATCG
TTTACAGAAA CGGGATCAAA TCCTGATGTA AAAGAATATT TCGACGGACA ATTGTTGCTG
TCAACGTTAA CACACAAAGC AATTGCACTG TCAGGAAGAT CGTCTGAAAA AACATTGCGC
CTGCAAGATC TGACACAAGC CTTGTCGTGC TATCAGTCCT GTGACACTTT GCTGGATCAG
CTTCGGCAGA CACGTACCAG CAAGAATGAT AAAGTTGCGC TGGGCGCATA CAGTTATGAT
ATCTACGACA AAGCGGTTGA ATTAAGTCTG TTTCTTTCAC AGAATACATT CAAAAAGAAA
TACTATCAGC AGCTTGCATT CTATTTTGTT GAGCGCAGTA AGGCATCGGT GTTGCAGGAA
TCTATTTCAG AGGCAAAAGC GAAAAGTTTT GCCGGCATAC CGGATTCTAA AATTGAAGAA
GAAGATACGT ACAAAACAAC CATTACTTAT CTCGAACAAA AGCTTGCAAA AGGAATCAGT
GATAAAGATC AATTCAAAAC TGTTTCTGCA CAGCTGTTCG AAACAAAGAG GAAGTATGAA
GCATTTATAA CATCGCTGGA AAAAAATTAT CCGGCGTATT ATAATTTAAA ATATAATGTA
CAGCCTGTAA TAATGGAAGC CATTCAGGCA AAGCTTAGTG AGGGCGATTG TGTGCTGGAA
TATTTTGTTT CAGAAAAATC AAAAACGGTA ACAACGTTTG TTCTTACAAA CAAAGCCGTA
CGTGTATATA TGGTTCCGTT GAAAGATACC TACAGCAAGT ATATTTCCGG CATGCGTAAT
GCAATTAAGT TTGACAGTAA AGCCACATTT ATAAAAACAT CAACGGCACT ACACAAGCAA
TTAATTCCTT CTCTTCCTAA GCACTGCAGC CATCTGATCA TTATTCCCGA TGGAAAAATG
GCCGCTATTC CATTTGAAGC TTTGATAGAG AAACGCCCTA AACACGACAC AAGTAGTTAC
GCGCAAATGG GTTTTATGAT TAAAAAATAT GCAACAAGTT ATACCTATAC AGCATCATTG
TACGAAAATA CGCATGAAGC AGCAAAAGTA AAAAAAGTAT TATTATTTGC TCCCGTAGAC
TTCAGCGCTT CCAGCGATCT GAATGCATTA CCCGGGACAT TAGCGGAAGT GGATACATTA
ACAAGTCTTT GTACAAACAC AGCACAGGCA GATGTATACA CATATACGGC AGCTTCAAAA
GCAGTTCTGG TAAGCGATTC GCTTAGTGGC TATTCAATTA TACATTTGGC TACACATGGT
TTGGTAGATG AAGAACAGCC GGAATTGTCC TGTATTTATA CTTCCGGAAC TTCCGAAGAA
AATGACCGTA TATATGCAGG AGATATGTAT AATATGCATT TAAATGCAGC GTTGGTATCC
TTGTCCGCCT GTCAGACAGG TTTAGGTAAA ATTGAAAAGG GCGAAGGCAT GATCGGGTTG
TCCAGAGCAC TGTTTTATGC AGGAGCGGAT AATATTATGG TATCGTTATG GAAAGTATCC
GATCTGTCAA CACAAGTCTA CATGCAATAT TTTTACAGCA TCTACCTGTC AGAAAATTTT
ACAACGTTTG CGGAAGCAGC GCGTATTTCT AAAATTAAAT TATTGAATTC AGAAACATTT
AATAGTCCTT ATTATTGGGC TGCATTTATT TTAATTGGTA AATAA
 
Protein sequence
MYAVEADLHK DIEPVAYYLY CETQRAECAI RLSDLDEAQA IVQAALKQCP AALVNSKALL 
QNAQAKIYYQ KGLLDQAHAE IMSAIELLKG GTSFYWRSPL SECYNTEGLI DWLRGNDEKS
LEYLNQALEI RKELFGEHTA QVAAVYNNMG LVYSGIDSDE AVFYYENALE IYQSIYPENH
PALAVAYSNL AQIYRKQEAY NTALTQYEKA LEIWEQRYPG MHPNKAFVYS GMAQVYEDKG
AYDQALTQAK KALEIYKQEY GRHPNTAACF TLIGSIFTGQ REYTKAIHAF QLALMYNTAS
FTETGSNPDV KEYFDGQLLL STLTHKAIAL SGRSSEKTLR LQDLTQALSC YQSCDTLLDQ
LRQTRTSKND KVALGAYSYD IYDKAVELSL FLSQNTFKKK YYQQLAFYFV ERSKASVLQE
SISEAKAKSF AGIPDSKIEE EDTYKTTITY LEQKLAKGIS DKDQFKTVSA QLFETKRKYE
AFITSLEKNY PAYYNLKYNV QPVIMEAIQA KLSEGDCVLE YFVSEKSKTV TTFVLTNKAV
RVYMVPLKDT YSKYISGMRN AIKFDSKATF IKTSTALHKQ LIPSLPKHCS HLIIIPDGKM
AAIPFEALIE KRPKHDTSSY AQMGFMIKKY ATSYTYTASL YENTHEAAKV KKVLLFAPVD
FSASSDLNAL PGTLAEVDTL TSLCTNTAQA DVYTYTAASK AVLVSDSLSG YSIIHLATHG
LVDEEQPELS CIYTSGTSEE NDRIYAGDMY NMHLNAALVS LSACQTGLGK IEKGEGMIGL
SRALFYAGAD NIMVSLWKVS DLSTQVYMQY FYSIYLSENF TTFAEAARIS KIKLLNSETF
NSPYYWAAFI LIGK