Gene CHU_0262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0262 
Symbol 
ID4184026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp318959 
End bp319513 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content41% 
IMG OID638070272 
ProductRNA polymerase sigma factor ( RNA polymerase sigma-24 factor) 
Protein accessionYP_676894 
Protein GI110636687 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCGCCTT TAAATCTACA TACCGACACA ACTCCTTCTC TGTTAACCTT TTCAGATGTT 
AAGTCATTTG AAAAAATTTA CACGATGTAT TGGGCAAGGG TTTATGCAAC CTGTTATAAT
ACGATTAAGG AGCGGGAAGT TGCCAAAGAA ATGGTTCAGG ATATTTTTAA ATCACTTTGG
GAAAGAAAGG ATGAGCTCGA AATAAAAACT TCTGTTGAAC ATTATCTGGT ACGGGCCGCC
AAATTTAAAG TGTTCGAATA CATCCGGAAT AAAACAAATC AAAAAAAGCA TACAGCCTGT
GCACTGGAAG ATTATTGTTC GGCAACCAAC TGCACAGAAG ATGCTATTCT ATACAGCAAC
CTTACAGAAA AAGTTGGCGT GTTAGTGGAC CGGCTTCCTT GCCAATGCCG GAATGTATAT
ACTTTAAGCC GTACTGAAGG CTTAACAAAC AAAGAAATTG CCACCCGCTT ACTGATTTCT
GAACGCGCGG TAGAACAGCA CATCACCAAA GCCCTGCGCT TCTTGCGGGA AAACCTGCAG
GAGTATCGCT CCTAG
 
Protein sequence
MSPLNLHTDT TPSLLTFSDV KSFEKIYTMY WARVYATCYN TIKEREVAKE MVQDIFKSLW 
ERKDELEIKT SVEHYLVRAA KFKVFEYIRN KTNQKKHTAC ALEDYCSATN CTEDAILYSN
LTEKVGVLVD RLPCQCRNVY TLSRTEGLTN KEIATRLLIS ERAVEQHITK ALRFLRENLQ
EYRS