Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0162 |
Symbol | |
ID | 4183555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 201490 |
End bp | 202659 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 638070171 |
Product | cation efflux system protein |
Protein accession | YP_676794 |
Protein GI | 110636587 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.002148 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.387859 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAAACGA TCATGAAAGC AATATATATA ATAAGTCTTT TGACAGCTGC CGCATTAAGT GCGTGCAGTT TGAAACCACA GGAAGAAGAA ATTCAAAAAG ACAGCATTGC CGATTTAGCT GTGACACTAT CAGCTGCACA GCTTAAGCAT ATACATTTAT CAACTACCAA AATAGAAAAG AAAAAATTAG GAGCATCAAT AGAAGTAAAT GGAATGCTGG ATGTGCCTCC TCAAAATCTT ATTACGGTGT CTGCATTATT GGGTGGTTTT ATTAAAACAA CAAGTATGCT TCAAGGTATT CACGTAAAGA AAGGTGAGGT AATTGCACAA ATTCAGAATC CGGAGTTTAT AACCATTCAA CAGAATTATT TAGAAAATAA AAGCAGACTT GGTTATTTAG AGCAGGAATA TAAAAGACAG GAAGAGCTTT CGAAAGAAAA TGTTGCAGCA GCTAAAACAT TTCAGCAAGC TACTGCAGAC TATCATTCGG CAGTGGCAAC GAACGGTGCA TTAAAAGAAA AATTAAAAAT GATTGGCATT AATCCGGATG GGCTTAATCA AAACAATATC AAAAGCATTG TAAATATTTA TTCGCCGATA AATGGTTATG TAACCGTTGT GAATATTAAC ATCGGTTCGT ACTTAAACCC GCAGGATATC ATTTGTGAAA TTGTAGATAC CGACCACTTG CATGCTGAAC TGACGGTTTT TGAAAAGGAT ATTACCAAAG TGAAAGTTGG ACAGAAAGTA GTTTTTAAAA TTGTGAATGG AAATGATGCG GATCGATTCG CACATGTGTA TTTAATTAAT CACAAAATAT CTGCAGACAG AACCGTACGT GTACATGCTC ACCTGGATAA AGATGATCCC ACATTAATTC CTAATATGTA CCTGAAGGCG TTTATTCAGG TAGATGAATA CGAAACACTG GCGGTACCAA GTAAAGCATT GGTTGAATTT GACGGGGCGA GCTATCTTTT TGTAGAAAGC GTTAGCAATG GTGAAGCTCA TACATACAAG GCGGTAGAAG TAAAGAAAGG AATTTCAGAA GGAAACTTTA CTGCCATTGA ATTCCTTTCA GAAGGTGATA CTTTTAAAGA TAAAAATGTT GTTGTCGATG GATCGTATGA TCTGCTCGCA AAAATGCGAA ATGTAGAAGA AGAGGAGTAA
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Protein sequence | MKTIMKAIYI ISLLTAAALS ACSLKPQEEE IQKDSIADLA VTLSAAQLKH IHLSTTKIEK KKLGASIEVN GMLDVPPQNL ITVSALLGGF IKTTSMLQGI HVKKGEVIAQ IQNPEFITIQ QNYLENKSRL GYLEQEYKRQ EELSKENVAA AKTFQQATAD YHSAVATNGA LKEKLKMIGI NPDGLNQNNI KSIVNIYSPI NGYVTVVNIN IGSYLNPQDI ICEIVDTDHL HAELTVFEKD ITKVKVGQKV VFKIVNGNDA DRFAHVYLIN HKISADRTVR VHAHLDKDDP TLIPNMYLKA FIQVDEYETL AVPSKALVEF DGASYLFVES VSNGEAHTYK AVEVKKGISE GNFTAIEFLS EGDTFKDKNV VVDGSYDLLA KMRNVEEEE
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