| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0003 |
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| Symbol | |
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| ID | 4186884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 1955 |
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| End bp | 3355 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638070001 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_676637 |
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| Protein GI | 110636430 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCAGAC AAAATAAACG ACAATCAGAT GATCGGGAAT TGGCCAGAAA ATTTGAGGAA
CTTCTGAAAG AAGGAACTCC TGGCTTTTTT GACGTAAGTG TTTACGAAAG CATCATCCAA
TACTATCTAG AAGGAACAAA ATTCAGAAAA GCACACAGAA CATGTGATAT TGCTATGGAG
CAGCATCCGT ATTCTGTAGA AATTATGTTG CTTAAGGTTC AGGTATTAAT GCAGATGACA
CAATTTGAAG AAGCATTAGA GATACTTGAC AGAGCACAGC TATATCAACC CAACGATACC
GACATTCAAT TGCTGCGTGC CAATATCATG GCTCAGCAGG ATGATTTTGA AGGGGCAATT
GAATTGCTTG AAGAGATACT TACGCTTGCC GAAGAGAAAG ATGAAATACA TTACCACATG
GGTGTAATTT ATCAGGATAT GGGTAACTTT GAAGAATCAA TCAATCACCT GAAGGAGGCA
ATTATGCTGA ACTCTCAGCA CGAAGATGCC ATCTATGAAT TGTCCTATAG CCTGGAAGTA
CTTGACCGCC TGGAAGAGAG TATAGACTTC TTTAAACAGT TAATTGAAAA AGATCCGTAT
TCACATTTTG CATGGTTCTG CCTCGGGGTA TCGTATTTCA AGCAAGGTAA GCTGGATGAG
GCACTGGATG CATATGAATT TGTAATAGCG ATTAACGATA AGTACTCTTC CGCGTATTAC
AACATCGGGG AATGTTATGT GTACAAAAAT GAATATGAGA AAGCGCTTGA GTATTTCTTC
CAGACCATGG ATATGGAAGA TAAAACGGCA GATGTTTTTT ACAACATAGG TTTTTGTTAC
GAGCATTTGG GCATGCACCC GAAAGCCATT GAGTTTTACC GCAAAGCATC CAAAGCCGAT
GCGTACTTCC ATGAAGCATA CTATGGAATA GGCAAGTGCC TGGAAGCACA GGATAAATCC
TACGAATCCA TTCATTTCTT CAAAAGAGCG TTAAAGCTGG ATGAAGCCAA TGCTGAATAC
TGGCTTGCAA AAGCGAATGC GGAATATAAA ACGGGCAACA TCATTTCGAG TCTGGAAGCA
TTTGAAGAAG CCTGTGTATT AGAGCCTTCC AATCCGGAAG TATGGAAAAA CTGGTCGTTT
GTACACTATG AAAGTGGTGA TATGGACAAG GCAATCGATT TAATCAATGC CGGGATTGAT
GAAATGCCTG GTAACGCAGA TTTATATTAT CGTGCTGTAG CATACCTGAT TACAGCAGGA
AGGTATAAAG AGGCATTTAA TTATCTGGAA AATGCATTAA CTTTAAACTT CGATAGCCAT
ACGGTGTTGT TTGAATTTTT CCCTAAATTG GAAACTCAAA AGGCATTATT CAGAATTATA
GATCAATACA GAAATAAATA A
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| Protein sequence | MARQNKRQSD DRELARKFEE LLKEGTPGFF DVSVYESIIQ YYLEGTKFRK AHRTCDIAME
QHPYSVEIML LKVQVLMQMT QFEEALEILD RAQLYQPNDT DIQLLRANIM AQQDDFEGAI
ELLEEILTLA EEKDEIHYHM GVIYQDMGNF EESINHLKEA IMLNSQHEDA IYELSYSLEV
LDRLEESIDF FKQLIEKDPY SHFAWFCLGV SYFKQGKLDE ALDAYEFVIA INDKYSSAYY
NIGECYVYKN EYEKALEYFF QTMDMEDKTA DVFYNIGFCY EHLGMHPKAI EFYRKASKAD
AYFHEAYYGI GKCLEAQDKS YESIHFFKRA LKLDEANAEY WLAKANAEYK TGNIISSLEA
FEEACVLEPS NPEVWKNWSF VHYESGDMDK AIDLINAGID EMPGNADLYY RAVAYLITAG
RYKEAFNYLE NALTLNFDSH TVLFEFFPKL ETQKALFRII DQYRNK
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