Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHAB381_1601 |
Symbol | nifJ |
ID | 5408471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter hominis ATCC BAA-381 |
Kingdom | Bacteria |
Replicon accession | NC_009714 |
Strand | + |
Start bp | 1525472 |
End bp | 1529023 |
Gene Length | 3552 bp |
Protein Length | 1183 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640871271 |
Product | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
Protein accession | YP_001407124 |
Protein GI | 154149287 |
COG category | [C] Energy production and conversion |
COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
TIGRFAM ID | [TIGR02175] 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00131984 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAAA TCATGAAGAC TATGGACGGA AACGAAGCTG CTGCTTATGT TTCTTACGCT TTTACGGAGG TGGCAGGAAT TTATCCTATT ACACCTAGTT CGCCGATGGC TGATTATACT GATGTCTGGG CAAGCCGTGG CAAAAAAAAT CTTTTTGGAA TGCCCGTTAA AGTTGTTGAA ATGCAAAGTG AAGGCGGCGC TGCCGGAACT GTGCATGGTT CGCTTCAAGC AGGTGCGCTT ACTACGACCT ATACAGCCGC ACAAGGTTTG CTTTTAAAAA TTCCGAATAT GTATAAAATT GCAGGACAGA TGCTTCCGGG AGTTATCCAC GTTGCAGCCA GATCGCTTGC TGCACAAGCA CTTTCAATCT TTGGAGATCA CCAAGATGTT TATGCCTGTA GACAAACCGG TTTTGCAATG CTTTCGAGTG CAAGTGTACA GGAAGTTATG GATATCGGCG GTATTGCTCA CTTAGCCGCA ATCAAAGGTC GCGTACCATT TCTACACTTC TTCGACGGTT TTCGCACAAG CCACGAAATT CAAAAAATAG AGGTTATGGA TTACGCAGAT TTCGATAAAC TTTTAGATAG AAAAGCCGTT CAAGCTTTTC GCGATAATGC ACTGAACTCA GAACATCCAA AAACACGTGG AACTGCACAA AACGATGATA TATATTTCCA AACAAGGGAG CTTTCAAATA AATATTATGA AGCAGTTCCT GATATTGTAG CCGATTATAT GGCTGAAATT TCAAAAATCA CAGGCAGAGA TTATAAACCG TTTAATTATT ACGGCGCAAA AGACGCTACA AATATCATAG TTGCAATGGG TTCTGTAAAT GAGGCGCTGG AAGAAGTTGT GGATTATTTG ACAAGCAAAG GCGAAAAAGT CGGCGTTATA AAAGTTCATC TTTATCGACC GTTCAGTCTA AAATATTTCT TTGACGTATT ACCAAAAAGC GTTGAAAGAA TCGCTGTTTT AGACCGCACG AAAGAGCCTG GAAGTATTGG CGAACCGCTT TATTTGGATA TAAAATCAGC ATTTTACGGA AATAAAAAAG AACCGTTGAT TATAGGCGGA CGCTACGGCT TGAGTTCAAA AGACGTTGAT CCTGCACAAC TTATCGCAGT TTTTGAAAAT TTAAAATCAA AAGAGCCGAA AAATCGCTTT ACAGTCGGTA TTGATGATGA TGTTACTTTT ACTTCACTAA AAGTAGGCAA AAAAATTTCA CTTGGCGATC AAGACGCGAT AGAGTGTTTA TTTTATGGAC TTGGAGCAGA CGGAACTGTA GGAGCTAATA AAAACTCAAT TAAAATCATC GGAGATAAAA CCGATCTTTA TGCGCAAGCT TATTTCGCTT ATGACAGTAA AAAATCAGGC GGATATACAA GAAGCCATTT AAGATTTGGC AAAAAACCGA TCCGCTCAAC TTATCTGGTA TCAAATCCGC ACTTCGTAGC TTGCTCGGTT GCGGCTTATC TTGATGTATA TGACGTAGTA GATGGGATAC GTGAAGGCGG CACTTTTTTA TTAAATTCAA TTTGGGATGC AAAAGAGACG ATTGAAAAAA TTCCAAACAA AGTAAAAAGA ATTTTAGCTG AGAGGAAAGC TAAATTTTAT ATCCTGAATG CAACAAAACT TGCTTCTGAA ATAGGACTTG GAAACCGCAC AAATACAATT ATGCAATCAG CATTTTTTAA ACTTGCAAAC ATAATTCCTT TTGATGACGC AAAAGCTTAT ATGAAAGAGT ATGCTAAAAA AACTTACGGC AAAAAAGGCG ATAAAATTGT TCAAATGAAT TATGATGCGA TTGACCGCGG TGCAGATGGA CTTATAGAGA TAAAAGTAGA TCCTGCGTGG ATAAATCTTA AAGATGAAAC TACAAATGAA CACGATAAAT ACAAAGGTGA CAAATTTATA GAATCTGTTG TAAAACCTAT AAATGCGGCA CGCGGCGATA AACTTCCTGT TTCAGCATTT TTAGGACACG AAGACGGCAG TTTTGAAGCG GGCACTACAA AATATGAAAA ACGTGGTGTT GGTGTAATGG TGCCAAAATG GATAAAAGAA AATTGTATCC AATGCAATCA ATGCGTTTTT GTTTGCCCTC ATGCTGTAAT TCGCGCATTT TTGCTTGATG AAAAAGACGA ACAGAATTCA CCTGAGAGTT TAAAACCTAA TTTGATTGAT GCAAAAGGCA AAGATGTAAA AGGGTATAAA TATAAAATTC AAGTAAGCCC GCTTGATTGT ACAGGTTGCG AACTTTGCGC ACAAAATTGT CCAAGCAAGG AAAAATCTCT TGTAATGGTT CCGCTTGAAG AAGAAATTGA CAATAAAGAA CAAGAAAATG CCGATTATTT GTTTCAAAAT GTTACTTACA AATCGGATCT TACAGGAAAA GAGAGTGTAA AAGGTATCGG TTTTGCAAAA CCTTATTTTG AATTTCACGG TGCGTGTCCT GGATGCGGCG AAACACCTTA TATCACAGCA GTTTCAAGAT TATTCGGTGA CCATATGATT GTAGCAAATG CGACAGGTTG CAGCTCGATT TACGGCGGCT CTGCACCTTC TATGCCTTAT ACGCATGACG AAAACGACAG AGGTATCGCT TGGGCAAACT CACTTTTTGA AGATAATGCC GAATTTGGTT TTGGTATGAG AGTGGCGAGC GAGACATTAA GACACCAAAT AGAAAATATA ATGCTTGAAA CAAAAAAAGA TGTTCCAAAC GCACTTAGCG CACTTTATAC AGACTGGATA GAAAACCGCA ACGACAGCCT TAAATCAGCC GAAATTCGTG ATCGCTTAAT TCCTTTGCTT GAAGCGAATA AAAAAGAAAA AGGCGTAGCT GAAATTTTAG GTTTGAAACA ATATCTATCT AAAAAATCTC AATGGATTAT AGGCGGTGAC GGCTGGGCTT ATGATATCGG TTATGGCGGA CTTGATCACG TTTTGGCAAG CGGCGAAAAC ATAAATGTGC TTGTTCTTGA TACAGAAGTT TATTCAAACA CAGGCGGACA AAGTTCAAAA GCAAGCCGCA CAGGTTCAAT AGCACAATTT ACAGCAAGTG GAAAATCCGT CCAAAAGAAA GATTTAGGAC AAATTGCGAT GACTTACGGC AACATTTTTG TAGCTCAAAT CAACTCAAAC GCAAGTCAGG CAAATATGAT AAAAGCCATC CTGGCAGCCG AAGCATACGA CGGACCTAGC CTTATTATTT GTTACGCGCC TTGTATTTCG CATGGTATAA AAGGCGGTTT GGCTAAATCA GGAAATCAAG CCGAACTTGC AACAAAATGC GGATATTGGC CGACTTATAT ATTTAATCCT GAACTCTTAA AAAGCGGACA AAATCCTTTG AAAATAACTT CGAAAGAGCC GGATTGGGAA CTTTATGATG AATTTTTGTC AAATGAAGTT CGCTACAATG CGCTTAAGAA ATTTAATCCT GATCACGCAA GTGAGCTTTT AGAACAAAAC AAAAAAGATT CTCAAAGAAG ATATCGCCAA CTGGTTAGAT TTTCAAAATC AGATTTCAGC GATGAAATTT AG
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Protein sequence | MSKIMKTMDG NEAAAYVSYA FTEVAGIYPI TPSSPMADYT DVWASRGKKN LFGMPVKVVE MQSEGGAAGT VHGSLQAGAL TTTYTAAQGL LLKIPNMYKI AGQMLPGVIH VAARSLAAQA LSIFGDHQDV YACRQTGFAM LSSASVQEVM DIGGIAHLAA IKGRVPFLHF FDGFRTSHEI QKIEVMDYAD FDKLLDRKAV QAFRDNALNS EHPKTRGTAQ NDDIYFQTRE LSNKYYEAVP DIVADYMAEI SKITGRDYKP FNYYGAKDAT NIIVAMGSVN EALEEVVDYL TSKGEKVGVI KVHLYRPFSL KYFFDVLPKS VERIAVLDRT KEPGSIGEPL YLDIKSAFYG NKKEPLIIGG RYGLSSKDVD PAQLIAVFEN LKSKEPKNRF TVGIDDDVTF TSLKVGKKIS LGDQDAIECL FYGLGADGTV GANKNSIKII GDKTDLYAQA YFAYDSKKSG GYTRSHLRFG KKPIRSTYLV SNPHFVACSV AAYLDVYDVV DGIREGGTFL LNSIWDAKET IEKIPNKVKR ILAERKAKFY ILNATKLASE IGLGNRTNTI MQSAFFKLAN IIPFDDAKAY MKEYAKKTYG KKGDKIVQMN YDAIDRGADG LIEIKVDPAW INLKDETTNE HDKYKGDKFI ESVVKPINAA RGDKLPVSAF LGHEDGSFEA GTTKYEKRGV GVMVPKWIKE NCIQCNQCVF VCPHAVIRAF LLDEKDEQNS PESLKPNLID AKGKDVKGYK YKIQVSPLDC TGCELCAQNC PSKEKSLVMV PLEEEIDNKE QENADYLFQN VTYKSDLTGK ESVKGIGFAK PYFEFHGACP GCGETPYITA VSRLFGDHMI VANATGCSSI YGGSAPSMPY THDENDRGIA WANSLFEDNA EFGFGMRVAS ETLRHQIENI MLETKKDVPN ALSALYTDWI ENRNDSLKSA EIRDRLIPLL EANKKEKGVA EILGLKQYLS KKSQWIIGGD GWAYDIGYGG LDHVLASGEN INVLVLDTEV YSNTGGQSSK ASRTGSIAQF TASGKSVQKK DLGQIAMTYG NIFVAQINSN ASQANMIKAI LAAEAYDGPS LIICYAPCIS HGIKGGLAKS GNQAELATKC GYWPTYIFNP ELLKSGQNPL KITSKEPDWE LYDEFLSNEV RYNALKKFNP DHASELLEQN KKDSQRRYRQ LVRFSKSDFS DEI
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