Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CFF8240_1316 |
Symbol | rpoB |
ID | 4538217 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Campylobacter fetus subsp. fetus 82-40 |
Kingdom | Bacteria |
Replicon accession | NC_008599 |
Strand | - |
Start bp | 1306567 |
End bp | 1310706 |
Gene Length | 4140 bp |
Protein Length | 1379 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 639746683 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_892468 |
Protein GI | 118475419 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0378497 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTAAATA GCCTATATTC TGGAAATCGT CTCAGAGTTG ATTTTTCAAA TGTTGCAAAA GAGATTGATG TTCCAAATTT ATTACAATTG CAAAAAAAGA GTTTTGATCA TTTTTTAAAT CTTGATAATT CACAAACCGA AAGCGGAATT GAAAAAGTAT TTAAGTCGAT ATTCCCAATA CATGATCCTC AAAATAGACT TACATTAGAG TATGTCAGCA GCGAAATAAG TAAGCCAAGA TATACAGTTA GAGAGTGTAT GGAAAGAGGA CTTACGTATT GCGTAAATTT AAAAATTAAA ATTAGACTGA TTGTACATGA CAGAGATGAA AAAACAAGTG AAAAAGTCGG TGTCAAAGAT ATAAAAGAAC AAGAAATTTT TGTACGTGAA ATTCCTCTTA TGACTGATAG AATTTCATTT ATAATAAACG GCGTAGAAAG AGTCGTAGTA AATCAGCTTC ATAGAAGCCC AGGTGTTATA TTTAAAGAAG AAGAGAGTCC AACTGTAGTA AATAAACTAA TATATACAGC GCAAATTATA CCAGATCGCG GTAGCTGGCT CTATTTCGAA TATGACACAA AAGATGTTTT ATATGTGCGT ATAAATAAAA GAAGAAAAGT TCCTATAACG ATTCTTTTTA GAGCGCTTGG ATATAAAAAA CAAGATATAG TAAAGTTATT TTACCCTATC CAAACATTAA ATATAAAAAA TAATAAATTT TTAACCATGT TTAATCCGGA TGATTTTTCT GGAAGAGTTG ATTATGATAT AAAAGATGAA GATGGAAATA TTTTACATCA AGCAGGAAAG AGACTTACAA AGAAAAAAGC AGATAAGCTT ATTGAAGATG GACTCAAATT TGTAGAGTAC CCGATAGAAG TTTTGGTAAA TAGATATTTG GCTAGTCCAG TTATCGATAA AGAGAGCGGC GAAGTTATTT ATGATACTTT AACTCAGCTA GATGAAAATA AATTAGCAAA AATAGTAGCT GAACAAAATA GTATAGAAAT AGCAAATGAT CTTGCAAGCG GTGTTGATGA TGCTATTATT AACTCATTTT TACAAGATTA TGAAACGCTA AAATTACTTA AGCAAACTGA AGGCTTAGAA GATGAAAATG ACCTGGCTGC TATTAGAATT TATAAAGTTA TGCGCCCAGG AGAGCCTGTA GTTAAAGAAG CTGCAAGAAC GTTTGTAAAT GATCTATTTT TTAACCCAGA AAGATATGAT CTTACAAAAG TAGGTCGTAT GAAAATGAAT CATAAATTAG GTCTTAGCGT TCCTGAGTAT GTTACTGTAC TTACAAATGA AGATATTATA AAAACTGCTA AATATCTGAT AAAAGTAAAA AACGGACAAG GTTATATAGA TGATAGAGAT CACTTAGGTA ACCGTCGTAT CAGATCAATA GGCGAGCTTT TAGCAAATGA GCTTCATTTG GGATTTGTGA AAATGCAAAA AGCTATTAGA GATAAATTTA CAAGTCTTAG TAATAACGTA GATGAGCTTA TGCCTTATGA TCTAGTAAAT CCTAAAATGA TAACTACGAC TATTATGGAA TTTTTTACAG GCGGTCAGCT CAGCCAATTT ATGGATCAAA CAAATCCTCT TAGCGAAGTT ACGCATAAAC GTCGTTTGTC GGCTCTTGGC GAAGGCGGTT TAGTAAAAGA GCGTGCCGGA TTTGAAGTAC GTGACGTGCA TCCGACTCAT TATGGTAGAA TTTGCCCTGT TGAGACTCCA GAAGGTCAAA ATATCGGTCT TATCAACACT CTTTCTACAT ATGCAAAAGT AAATGATCTA GGATTTGTTG AATCACCTTA TAGAAGAGTA ATAGACGGTA AAGTCACAAA TGAGATTGTT TATTTAACAG CTACTCAAGA AGAGGGTCAT ATTATAGCTC CAGCTTCAAC TGTATTAGAT GCAAACGATA TTATAAAAGA AGATCTTATA GAAGTAAGGC GAGATGGAGA AATGCTTCTT GCAAAAAGAG AAGACGTAAC ATTGATAGAT CTTTGTAGTG GTATGGTTAT GGGCGTTGCC GCTTCTTTGA TACCGTTTTT AGAGCATGAT GATGCAAACC GTGCACTTAT GGGTTCAAAC ATGCAGCGTC AAGCAGTTCC TCTTCTTAGA TCTACAGCAC CTATAGTAGG AACCGGTATG GAAGCTATAG TTGCAAGAGA CGCGTGGGAG GCTATAAAAG CTAAACGTGG TGGCGTTATA GAAAAAGTTG ATAATAGAAA CATATTTATT CTTGGTGAAG ATGAAAACGG TCCATATATT GATCAATATA CTATGGAAAA AAATTTAAGA ACTAACCAAA ATACAACTTT TAGCCAACAT CCTATAGTTA AAAAAGGCGA TATGGTAAAA TCAGGACAGA TAATAGCTGA TGGCTCGAGT ATGGAAAAGG GCGAGTTAGC CATAGGTAAA AATGCTCTTA TAGCATTTAT GCCTTGGAAT GGTTATAACT ATGAAGATGC TATTGTTATG AGTGAGAGAA TGATACGCGC AGACGCATTT ACTAGCGTTC ATATATATGA AAAAGAGATA GAAGCAAGAG AGCTAAAAGA CGGTGTAGAA GAGATAACTA GAGATATTCC AAATATGAAA GAAGAAGATC TTATGCACCT AGATGAGAGC GGTATAGTAA AAATAGGCAC TCATATCAAA CCAGGAATGA TTTTGGTGGG TAAAGTTTCA CCAAAAGGAG AGGTAAAGCC GACTCCCGAA GAGAGACTTC TTAGAGCAAT ATTTGGTGAA AAAGCAGGTC ACGTTGTAAA TAAATCTTTG TATGCCGGAG CTAGTCTTGA AGGTGTGGTT ATAGATGTTA AGATATTTAC AAAAAAAGGC TATGAAAAAG ACGCTAGATC ATTTAAAGCA TATGAGGATG AAAAGAATAT TTTAGAAAAA GAACATCATG ACAGACTTTT AATGCTTGAT CGTGAAGAGA TGTTAAGAGT TACTGCTTTA TTATCTAAAA ATCCTCTTGA GAGTGAGCTA GAGATCGGTA AAAATAGCTA TAAAAAAGGT GATAAGATAA AAAGATCAGA TCTTGATAAT GTAAATAGAT TTACTCTTAA CACCTATGTA AAGTGCTTTT CAAAAGAAAT TCAAAAAACA TATGAAGATA TGAAAGCTTA TTTTCAAAAT GAGAAGAAGA AATTAAAAGA CGAGCATGAC GCTAAACTTG AAATTTTAGA AAAAGATGAT ATATTGCCAA GCGGTGTAGT TAAGTTAGTT AAAGTATATT TAGCTACAAA AAGAAAATTA AAAGTAGGCG ATAAGATGGC AGGACGTCAT GGCAATAAAG GTATTGTATC AAATATAGTT CCGGATGTTG ATATGCCGTA TCTTCCAAAT GGACGTACGG TAGATATAGT TTTAAATCCA TTAGGCGTTC CAAGTCGTAT GAATATAGGT CAAATTTTAG AAAGCCACCT AGGTTTAGTT GGTATGAAAT TAGGAGAGCA GATTGAAGAA ATCTTTGAAA ATAAAAAAGC CGAATGGATA AAAGAGCTAA GAGCAAAAAT GACTGAGATA GCAGATGTAT CTCGTCTTAT GGATGCTAAA GCTATTTTAA GCAAAATTGA TGATGATAAG CTCATAGATT ATGCTAGGGA CTGGGCTAGC GGGGTTAGAT TTGCTACTCC TATTTTTGAA GGTGTTAAAG CTGATGAATT TAAAAAGTTA TTTGAGATGG CAAAAATAGA TATGGATGGT AAAACCGAAC TTTATGACGG ACGTACCGGA TCAAAGATGG CTGAGCGTGT TAATGTTGGA TGTATGTATA TGTTAAAACT TCACCACTTA GTTGATGAAA AAGTTCATGC AAGAAGTACC GGACCATACT CTTTAGTAAC ACAACAACCA GTTGGTGGTA AAGCTCTAAG CGGTGGTCAA AGATTTGGAG AAATGGAAGT TTGGGCACTT GAGGCTTATG GCGCGGCTCA TACTTTAAGA GAAATGCTGA CTGTAAAATC TGATGACGTA GAGGGTCGTT TAGCTGCTTA TAAAGCACTT ACTAGAGGAG AAAATGTACC AAGTACTGGT ATTCCAGAAA CGTTTTTTGT TTTAACAAAT GAGCTAAAAT CTCTAGCACT TGATGTTGAG ATCTATGATG AGGAAGAGAA TAATGAGTGA
|
Protein sequence | MLNSLYSGNR LRVDFSNVAK EIDVPNLLQL QKKSFDHFLN LDNSQTESGI EKVFKSIFPI HDPQNRLTLE YVSSEISKPR YTVRECMERG LTYCVNLKIK IRLIVHDRDE KTSEKVGVKD IKEQEIFVRE IPLMTDRISF IINGVERVVV NQLHRSPGVI FKEEESPTVV NKLIYTAQII PDRGSWLYFE YDTKDVLYVR INKRRKVPIT ILFRALGYKK QDIVKLFYPI QTLNIKNNKF LTMFNPDDFS GRVDYDIKDE DGNILHQAGK RLTKKKADKL IEDGLKFVEY PIEVLVNRYL ASPVIDKESG EVIYDTLTQL DENKLAKIVA EQNSIEIAND LASGVDDAII NSFLQDYETL KLLKQTEGLE DENDLAAIRI YKVMRPGEPV VKEAARTFVN DLFFNPERYD LTKVGRMKMN HKLGLSVPEY VTVLTNEDII KTAKYLIKVK NGQGYIDDRD HLGNRRIRSI GELLANELHL GFVKMQKAIR DKFTSLSNNV DELMPYDLVN PKMITTTIME FFTGGQLSQF MDQTNPLSEV THKRRLSALG EGGLVKERAG FEVRDVHPTH YGRICPVETP EGQNIGLINT LSTYAKVNDL GFVESPYRRV IDGKVTNEIV YLTATQEEGH IIAPASTVLD ANDIIKEDLI EVRRDGEMLL AKREDVTLID LCSGMVMGVA ASLIPFLEHD DANRALMGSN MQRQAVPLLR STAPIVGTGM EAIVARDAWE AIKAKRGGVI EKVDNRNIFI LGEDENGPYI DQYTMEKNLR TNQNTTFSQH PIVKKGDMVK SGQIIADGSS MEKGELAIGK NALIAFMPWN GYNYEDAIVM SERMIRADAF TSVHIYEKEI EARELKDGVE EITRDIPNMK EEDLMHLDES GIVKIGTHIK PGMILVGKVS PKGEVKPTPE ERLLRAIFGE KAGHVVNKSL YAGASLEGVV IDVKIFTKKG YEKDARSFKA YEDEKNILEK EHHDRLLMLD REEMLRVTAL LSKNPLESEL EIGKNSYKKG DKIKRSDLDN VNRFTLNTYV KCFSKEIQKT YEDMKAYFQN EKKKLKDEHD AKLEILEKDD ILPSGVVKLV KVYLATKRKL KVGDKMAGRH GNKGIVSNIV PDVDMPYLPN GRTVDIVLNP LGVPSRMNIG QILESHLGLV GMKLGEQIEE IFENKKAEWI KELRAKMTEI ADVSRLMDAK AILSKIDDDK LIDYARDWAS GVRFATPIFE GVKADEFKKL FEMAKIDMDG KTELYDGRTG SKMAERVNVG CMYMLKLHHL VDEKVHARST GPYSLVTQQP VGGKALSGGQ RFGEMEVWAL EAYGAAHTLR EMLTVKSDDV EGRLAAYKAL TRGENVPSTG IPETFFVLTN ELKSLALDVE IYDEEENNE
|
| |